Sequence
atgc intronic sequence ATGC exonic sequence...ttttttattcagtatgacagcccatttctactctttttaaaatggaactaattcactttgtgttatcatacatatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G410191_T02 (Zea mays), 3'ss of exon 7
ttttttattcagtatgacagcccatttctactctttttaaaatggaactaattcactttgtgttatcata--catatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
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--acaaagttgattttattttatgtgcctaatcttgtcaaccataatctttctacctgctcgttcttatgatcctgtcatcttactttgtttaatcttgaagGGACCCTTCCCCTACCTTGGTCCAACAGGATGAAGATTGCTCTAGGTGCCGCGAAAGGACTAGCCTTCCTCCATGGAGGTCCCAAACATGTTATTTACAG
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G22790.1 (Glycine max), 3'ss of exon 3
-----------ttttttattcagtatgacag-----------cccatttctactctttttaaaa----tggaactaattcactttgtgttatcatacatatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
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attgcttccatattcttattgatgatgatagatctggaacaccttacaactacaatgttctggtccctttcctcttaatcattgtacctaacaataaaagTGCTGATTTTGCCTATA--TTTGAAGGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAA------------------------
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G12060.1 (Glycine max), 3'ss of exon 3
-ttttttattcagtatgacagcccatttctactctttt-taaaatggaactaattcactttgtgttatcatacatatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
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atgatagatctggaacaccttacaactactattttctggtctctttcctcttaatcattgtatctaacaataaaagtgctgattttgcctata--tttgaagGAACTGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactaattcactttgtgttatcatacatatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
ttatcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttattcagtatgacagcccatttctactctttttaaaatggaactaattcactttgtgttatcatacatatgctgatgttatctcaaatcttgaagGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAG
- - - - -cagtatg
- - - - - - - - -cagccca
- - - - - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat