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...tctttcctcattacactttaaaaggaaaaaaaaaaaaattccttttcctcattattgcttatttgtgctaatggaccaatttttattaatctggatacagGATACACACTCTCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTTGACTTGAATCGCCCAGATGCACCTCCTAGAGAAGTGGATAATTCTCCTG
species | Vitis vinifera |
transcript | Vv11s0016g04710.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAG GATACACACT-TCCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTEST: gi|161716787|gb|FC069173.1|FC069173
genomic: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGgtagaccttt ... ctggatacagGATACACACTCTC-TGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATT
EST: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAG GATACACACT-TCCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTEST: gi|110702782|gb|EE079052.1|EE079052
genomic: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGgtagaccttt ... ctggatacagGATACACACTCTC-TGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATT
EST: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAG GATACACACT-TCCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTEST: gi|161718203|gb|FC065673.1|FC065673
genomic: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGgtagaccttt ... ctggatacagGATACACACTCTC-TGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATT
EST: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAG GATACACACT-TCCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATT
genomic: TGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGgtagaccttt ... ctggatacagGATACACACTCTC-TGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATT
tcctcattattgcttatttgtgctaatggaccaatttttattaatctggatacagGATACACACTCTCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTTGACTTGAATCGCCCAGATGCACCTCCTAGAGAAGTGGATAATTCTCCTG
tattaat putative branch site (score: 2)
aatttttattaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttcctcattacactttaaaaggaaaaaaaaaaaaattccttttcctcattattgcttatttgtgctaatggaccaatttttattaatctggatacagGATACACACTCTCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTTGACTTGAATCGCCCAGATGCACCTCCTAGAGAAGTGGATAATTCTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - tcctcat
- - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg