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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcagcatcttgaactcagtcttttgcagtaatttaagaatcaagaaaatgaaatttatgacataatgttttttcttttgttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGGGAATACTTTGGCAGAAG

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712692|gb|FC062264.1|FC062264
EST:     TTCATTCTTGTTTGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: TTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|110723682|gb|EE101272.1|EE101272
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|71881826|gb|DT030881.1|DT030881
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|71860519|gb|DT009574.1|DT009574
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGCAACAATTGCTTT
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTT
EST: gi|71861991|gb|DT011046.1|DT011046
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|161714953|gb|FC064236.1|FC064236
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaatcaagaaaatgaaatttatgacataatgttttttcttttgttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGGGAATACTTTGGCAGAAG
                               tgttttttcttttgtt  CT-rich tract
          aaaatgaaatttatga  TA-rich tract