Sequence
atgc intronic sequence ATGC exonic sequence...tatttattaagtttttccatactttagttcccattaaatgcaggaatttctatgttcacaaatgttcattacaatttgattcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 3
tatttattaagtttttccatactttagttcccattaaatgcaggaatttctatgttcacaaatgttcattacaatttgat--tcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
| ||| | |||| | | || | | | || | | |||| | | | || ||| || | || | || |||| ||| | |||||||| |||||||| ||| ||||||| |||||||| || ||||||||||| || || |||||||| |||||| | || || | | |||| |||
--gtaattttgaatttcttttcagtaatacttgaaagctgtttgttaaccattgttgtccactcttttttaaaaatatatgtctgttcctttttaaacacagATAACATCTCTATATGGTGGCCCTATAGAATTTCTTTTTGTGGTAGAAAGTACAGAGGATCCCGCTTACCATGCTGTATCACGATTAATAGCAGAATTTG
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G35860.1 (Glycine max), 3'ss of exon 2
tatttattaagtttttccatactttagttcccattaaatgcaggaatttctatgttcacaaatg--ttcattacaatttgattcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
|||| | || ||| || || || | | | | | | ||| ||| | || || ||| | || | |||| ||| | |||||||| |||||||| ||| ||||||| |||||||| || ||||||||||| || || |||| ||| |||||| | || || | | |||| |||
-attttgaatgtcttttca-gtaatacttgaaagttgtttgttaactattgttgtccactttttattttttttaaatatatgtctgttccttttaaacacagATAACATCTCTATATGGTGGCCCTATAGAATTTCTTTTTGTGGTAGAAAGTACAGAGGATCCTGCTTTCCATGCTGTATCACGATTAATAGCAGAATTTG
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------tatttattaagtt--tttccatactttagttcccattaaatgcaggaatttctatgttcacaaatgttcattacaattt---------gattcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
| || || | || | |||| || ||| | | | | ||| | |||| || ||| || |||| || || ||| || || | || ||||| |||||||| || || ||||||||||||||||| |||||||| |||||||| || || |||||||| | || | ||| | |
gtcagtccctcatgttgcagtatcattgtctcctttctaggcagagtttttttttttaatttgcatcatagttaagctttttgccagagaagtttgttgcttccaacttaaattttaagattgatccatgtctatgtgtagATTACTTCTCTCTATGGTGGGCCATTGGAATTCCTTTTTGTTGTAGAAAGTACGGAAGACCCTGCATATCACGCTGTTTCCCGTCTATTATCTATGTATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttctatgttcacaaatgttcattacaatttgattcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
tactaaa putative branch site (score: 1)
attacaatttgattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttattaagtttttccatactttagttcccattaaatgcaggaatttctatgttcacaaatgttcattacaatttgattcataaattactaaatgcagGTCACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTA
- - - - - - - - ccatact
- - - - - - - - - - - - -agttccc
- - - - - - - - - - - - - - - - - - - -gcaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaat