Sequence
atgc intronic sequence ATGC exonic sequencegtatgttgaaaatcttccaaagtagtaatgcaggtattaagtaggaactgctgaaacaagtagggtgttttaatatgtattaaaccactaaacatccatagaagtggcacaaaagctctttaatagggaaattgatcgatatgaaggacctcacctttaatttcatagtcactgaattgcaattcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g53800.1 (Oryza sativa), 3'ss of exon 2
gtatgttgaaaatcttccaaagtagtaatgcaggtattaagtaggaactgctgaaacaagtagggtgttttaatatgtattaaaccactaaacatccataga-agtggcacaaaagctctttaatagggaaattgatcgatatgaaggacctcacctttaatttcatagtcactgaattgcaattcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
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---------------------------------------------------------------------------cgtatcagtctgcagaaagtctaggcacaaccacacaaaatgaaatcagagatgaacttag--gatgtga-----cttaactgaaatttgaccctt------ttgtgatgc----agATATGTTATCCTTGGTAACCATCGTGATGCCTGGACGTTTGGAGCATCAGATCCCAATAGCGGAACGGCAGCTATGATTGAG
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g53810.1 (Oryza sativa), 3'ss of exon 2
gtatgttgaaaatcttccaaagtagtaatgcaggtattaagtaggaactgctgaaacaagtagggtgttttaatatgtattaaaccactaaacatccatagaagtggcacaaaagctctttaatagggaaattgatcgatatgaaggacctcacctttaatttcatagtcactgaattgcaattcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
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----------------------------------------------------------------aagtcct--catttttcatcccacaggagatgattagatttc---tagaaattttgtaaagccaaggcaaagc--taataagga--------taaatttgcccgtttgtgaac------------agATATGTGATCATAGGGAACCATCGTGATGCCTGGACATTCGGAGCAGTTGATCCCAACAGTGGAACAGCAGCTATGCTCGAG
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G01000.1 (Glycine max), 3'ss of exon 2
gtatgttgaaaatcttccaaagtagtaatgcaggtattaagtaggaactgctgaaacaagtagggtgttttaatatgtattaaaccactaaacatccatagaagtggcacaaaagctctttaatagggaaattgatcgata-tgaaggacctcacctttaatttcatagtcactgaattgcaattcctt-tagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
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-------------------------------------------------------gtatgcaagacatcct------ccttttatcattttgcattcagtaggacaaaaaattagat-tgtaatgtagccatgagtgaaagctttgaaaacatacatctggttt---agttactg--ttgcaattgcttgtagATTTGTCATACTAGGTAACCATAGGGATGCATGGACATTTGGAGCGGTTGATCCCAATAGTGGCACTGCAGCACTGCTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710708|gb|FC060286.1|FC060286EST: ACAATCCAGAATGTGTTTGGTGTGATCGAAGGAACAGAAGAGCCTGATCG ATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGA
genomic: ACAATCCAGAATGTGTTTGGTGTGATCGAAGGAACAGAAGAGCCTGATCGgtatgttgaa ... attcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgatatgaaggacctcacctttaatttcatagtcactgaattgcaattcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
ttccttt CT-rich tract
tttaatttcatagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttgaaaatcttccaaagtagtaatgcaggtattaagtaggaactgctgaaacaagtagggtgttttaatatgtattaaaccactaaacatccatagaagtggcacaaaagctctttaatagggaaattgatcgatatgaaggacctcacctttaatttcatagtcactgaattgcaattcctttagATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT