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gtaagatatcaccatgattgtcgactatcagttttcatgcttgcagatgcttgtattgaagctgcattctgccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCTTGCTTTTGGAGGCGCTTCACTCAGCTGGATATTCTGGGGCTTTGGCAA
species | Vitis vinifera |
transcript | Vv11s0016g02870.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|71879335|gb|DT028390.1|DT028390
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|71879768|gb|DT028823.1|DT028823
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|71878964|gb|DT028019.1|DT028019
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|77587546|gb|DV222937.1|DV222937
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|352763499|gb|FQ473202.1|FQ473202
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAAATTGGAGAAGCTTCCAACAATCCTCAAGGCEST: gi|46917512|gb|CN546841.1|CN546841
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
atcagttttcatgcttgcagatgcttgtattgaagctgcattctgccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCTTGCTTTTGGAGGCGCTTCACTCAGCTGGATATTCTGGGGCTTTGGCAA
ttctgccttct CT-rich tract
ttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatcaccatgattgtcgactatcagttttcatgcttgcagatgcttgtattgaagctgcattctgccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGCTTGCTTTTGGAGGCGCTTCACTCAGCTGGATATTCTGGGGCTTTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA