1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatttttggatgacatatgttgaattttatttccctacaatcccatatttttgcttgagaagcatgtggactcacattctaaagtttggtgaaaaatagGTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCCCTGGGTCTTCATCGCATGGTTGAAGCACTGAAACATATGTTTGCCATCC
species | Vitis vinifera |
transcript | Vv11s0016g02830.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATATTTGGAATGCCACCTCCTTCAAGTGGAACGCTCGGGCTTTCCTTG GTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCCEST: gi|56409313|gb|CX017565.1|CX017565
genomic: CTATATTTGGAATGCCACCTCCTTCAAGTGGAACGCTCGGGCTTTCCTTGgtgggtgttc ... tgaaaaatagGTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCC
EST: CTATATTTGGAATGCCACCTCCTTCAAGTGGAACGCTCGGGCTTTCCTTG GTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCC
genomic: CTATATTTGGAATGCCACCTCCTTCAAGTGGAACGCTCGGGCTTTCCTTGgtgggtgttc ... tgaaaaatagGTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCC
atatttttgcttgagaagcatgtggactcacattctaaagtttggtgaaaaatagGTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCCCTGGGTCTTCATCGCATGGTTGAAGCACTGAAACATATGTTTGCCATCC
ttctaaa putative branch site (score: 2)
tgaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttttggatgacatatgttgaattttatttccctacaatcccatatttttgcttgagaagcatgtggactcacattctaaagtttggtgaaaaatagGTTCTAAACATCTTCAATAGCTATGGGAGTTCAGATGCTGCAAGAGGATCCCTGGGTCTTCATCGCATGGTTGAAGCACTGAAACATATGTTTGCCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - -tggatga
- - - - - - - - - - - - - - - - tccctac
- - - - - - - - - - - - - - - - - - - -aatccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacat