1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagaacttaaaccgattctttctcaatgcttgaatggagaacatgagtaagttgtatatgattttgcagGTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAGAACAGGCTTACAGAGGAATCCTTGATTGTTTCTCAAAGACCTACAGAGAAGCCG
species | Vitis vinifera |
transcript | Vv11s0016g02470.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTTACATACCCTCTTGATCTAGTTCGGACCAAATTGGCTTACCAG GTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAGAACAGEST: gi|161721318|gb|FC070051.1|FC070051
genomic: TGCTTTTTACATACCCTCTTGATCTAGTTCGGACCAAATTGGCTTACCAGgtaaagaact ... gattttgcagGTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAGAACAG
EST: TGCTTTTTACATACCCTCTTGATCTAATTCGGACCAAATTGGCTTACCAG GTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAG
genomic: TGCTTTTTACATACCCTCTTGATCTAGTTCGGACCAAATTGGCTTACCAGgtaaagaact ... gattttgcagGTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAG
attctttctcaatgcttgaatggagaacatgagtaagttgtatatgattttgcagGTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAGAACAGGCTTACAGAGGAATCCTTGATTGTTTCTCAAAGACCTACAGAGAAGCCG
ttgtatatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaacttaaaccgattctttctcaatgcttgaatggagaacatgagtaagttgtatatgattttgcagGTTGTTGGATCAACAAAGCTGAACATCAAAGGGATAGTCCATGCAGAACAGGCTTACAGAGGAATCCTTGATTGTTTCTCAAAGACCTACAGAGAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC