1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttatttttttaactctgtgttgtattccaagaacctcaacaacctttcaactttaatgcgtttatatcactgttctaataaattagtttcttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCTCTGCCACAATGCCACCCGAGGCCCTTGAGATTACAAGGAAGTTTATGA
species | Vitis vinifera |
transcript | Vv11s0016g01920.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71889919|gb|DT038974.1|DT038974
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110392445|gb|EC957871.1|EC957871
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110702274|gb|EE080798.1|EE080798
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|30301294|gb|CB978088.1|CB978088
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71887390|gb|DT036445.1|DT036445
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110723538|gb|EE100968.1|EE100968
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71885808|gb|DT034863.1|DT034863
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71886699|gb|DT035754.1|DT035754
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|34549848|gb|CF518080.1|CF518080
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71888869|gb|DT037924.1|DT037924
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110370912|gb|EC934525.1|EC934525
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71887826|gb|DT036881.1|DT036881
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71886050|gb|DT035105.1|DT035105
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|30138064|gb|CB923402.1|CB923402
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110720401|gb|EE096301.1|EE096301
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|30132358|gb|CB917697.1|CB917697
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|33406752|gb|CF212379.1|CF212379
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110718128|gb|EE094609.1|EE094609
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71879323|gb|DT028378.1|DT028378
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|27583657|gb|CB006352.1|CB006352
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|27581953|gb|CB004648.1|CB004648
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: GGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71869531|gb|DT018586.1|DT018586
genomic: GGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71872121|gb|DT021176.1|DT021176
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71887455|gb|DT036510.1|DT036510
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110696480|gb|EE072635.1|EE072635
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|30134858|gb|CB920196.1|CB920196
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110718319|gb|EE095016.1|EE095016
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110712119|gb|EE089376.1|EE089376
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|71882859|gb|DT031914.1|DT031914
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCEST: gi|110696050|gb|EE074763.1|EE074763
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: TTGTGTTGGATGAAGCAAATGAAATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGGTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
ttcaactttaatgcgtttatatcactgttctaataaattagtttcttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCTCTGCCACAATGCCACCCGAGGCCCTTGAGATTACAAGGAAGTTTATGA
ttctaat putative branch site (score: 2)
ttagtttcttcctt putative PPT
ttctaataaattagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttttttaactctgtgttgtattccaagaacctcaacaacctttcaactttaatgcgtttatatcactgttctaataaattagtttcttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCTCTGCCACAATGCCACCCGAGGCCCTTGAGATTACAAGGAAGTTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - ccaagaa
- - - - - - - - - - - - - - - - -cctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaat