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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttctgctccccccttgtttgagagtactttcagcattgttgttggctttctttgtgatcaatgaccttatggtgatactattttcagGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATG

Basic information

species Vitis vinifera
transcript Vv11s0016g01060.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G05660.1 (Glycine max), 3'ss of exon 3
----gtaagcttctgctccccccttgtttgagagtactttca-----gcattgttg-------ttggctttctttgtgatcaatgac-------cttatggtgatactattttcagGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATG
    |||| |   | ||   | |||  |      |||| | |     |||  |||        ||  ||   |   | |||||| |        ||  |  | ||  |  || |||||| ||| | | ||| | || ||||||||  | ||||| || || |||||||| ||||||||||| ||||||||  |||| ||||| |||||||| ||||
gtaagtaatcaattactagtcactttctctgacatactctaattaatgcaccgtttggacaatttcactccttaattaatcaattattaactcactctttttaattattcttccagGATTATAATGCAAAACTTTCCGATTTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATG

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G08110.1 (Glycine max), 3'ss of exon 3
---------gtaagcttctgctccccccttgtttgagagtactttcagcattgttgttggctttctttgtgatcaatgaccttatggtgatactattttcagGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATG
          |||| |  |  |     |||    ||  |  |||  |       |  ||   |||||  |  ||| |   || ||  | ||| |  ||||||||| | | | | || ||||| ||||||||  | || || ||||| || ||||| |||||||| || |||||||||||||| ||||| ||||| || || |
gaaatagatataagatattcttatattcttcaaggattgctcttatatgggatataatgttgttcttaatactcactcttctcatt-taatatt-ctttcagGATTACAATGCAAAGTTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTTATGGGTACACACGGCTACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgttgttggctttctttgtgatcaatgaccttatggtgatactattttcagGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATG
                                             ctattttc  CT-rich tract
                                          atactatttt  TA-rich tract