Sequence
atgc intronic sequence ATGC exonic sequencegtgagtggaatcaaactactaatttgttaagcagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0523g00050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g42850.1 (Oryza sativa), 3'ss of exon 2
------gtgagtggaatcaaactactaatttgttaagcagtttg--gtactatgatatatagtaatcatcaaatggg--gttga---atgtcc--tgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
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attgtacattgttgcatcagcctaaacttttttggatgaatttatcggtgtatgcaacttgacaataatgaaataaaatgttcactcatgtttggtgcagTGACCTATCTGGAGAACAACAGAGCGGGGATCACGGTGTTCGGGTTCACGCTGGACAGGTCCTACCTGCACACGATATTCATGCTCGAGTGGACGCTCTT
upper sequence: Vv10s0523g00050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G11960.1 (Glycine max), 3'ss of exon 3
gtgagtggaa----tcaaactactaatttgttaagcagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
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gtaaatgggaatttttttagtggtattttacttgtcaaataattagtccatttttgtttcgtcat-gagttatctagctattgatgcagTGACATACTTGGAGAACAATAGAGCAGGAATCACAGTGTTTGGGTTCATGCTTGACAGAACTTGGCTTCACTCCATTTTTGGCATTCAATTGGCTCTTTG
upper sequence: Vv10s0523g00050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtgagtggaatcaaactactaatttgttaag-cagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
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gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgt---atatatt-tagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
tatgatatatagtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtggaatcaaactactaatttgttaagcagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG