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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcttcttaactttgttcctttgtgttttcctgtcacctaaagttgggtttcattttatattggacgttcttcagttagtagcttttttaggtgatgagagctatgcatggttttggaacttctgttggttgatgtggtgtccacgtactattatatgacctagttaacatttttttggctacttcagATGGGAACGTCTTGGGGATATTGTTGTGCTTCCGGTGACATCATTCAAGGATCCAATATGGGACTCAATTGGGGATGAACTTTGGCCTATCATTGCTAAA

Basic information

species Vitis vinifera
transcript Vv10s0116g01770.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01770.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G04670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgtgcttcttaactttgttcctttgtgttttcctgtcacctaaagttgggtttcattttatattggacgttcttcagttagtagcttttttaggtgatgagagctatgcatggttttggaacttctgttggttgatgtggtgtccacgtactattatatgacctagttaacatttttttggctacttcagATGGGAACGTCTTGGGGATATTGTTGTGCTTCCGGTGACATCATTCAAGGATCCAATATGGGACTCAATTGGGGATGAACTTTGGCCTATCATTGCTAAA
                                                                   | | ||  | |||      | |||| ||      | |  |||   |||||    |||  |   |  ||  |||| || |   | | | ||   || |  || ||    |||| |   ||| |  ||||||||||| |||||||||||||||||| |||| |  ||||| || || |||||||  |||  ||| ||    |||||| |||||  |    || |||||
-------------------------------------------------------------------gtaagtgttccagaatcctgattttataatactcggggactaaa-atggtg--agaatctgattgcgtgcatgttgtttttgctt-ccatctgataag-taattggtgttttatctactatt--agATGGGAACGGCTTGGGGATATTGTTGTGGTTCCTGCAACATCCTTTAAAGATCCAACTTGGAGCTCTATCAATGATGAAGTTTGGTGTGCTGTTTCTAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggtgtccacgtactattatatgacctagttaacatttttttggctacttcagATGGGAACGTCTTGGGGATATTGTTGTGCTTCCGGTGACATCATTCAAGGATCCAATATGGGACTCAATTGGGGATGAACTTTGGCCTATCATTGCTAAA
                             agttaac  putative branch site (score: 3)
                                              ctacttc  putative PPT
                            tagttaacattttttt  TA-rich tract