Sequence
atgc intronic sequence ATGC exonic sequencegtagcaattttttctgtgaaatttattatttcttcttgttgtaatttttatcattcctttttctattggactgtcacatggaattgaatctggaatctttccatgccctcattttttttttttttttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G02490.1 (Glycine max), 3'ss of exon 16
gtagcaattttttctgtgaaatttattatttcttcttgttgtaatttttatcattcctttttctattggactgt--cacatgga-attgaatctggaatctttccatgccctcattttttttttttttttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
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-----------------------------------------------ccgctacgatgaaagaaaatgaactattccagatagatgttcagtttttggattagttttgg--tggcttactgatttctgcctttctgtaatgtttttcagGTTCTCTACAGTGTTCAATCATGATAATGATTCACTACCTAGAGTTTGGACTGGGAAGGAAGATATTAGAGCTATTACAAGGGATGCTCGCTCTGCG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 16
gtagcaattttttctgtgaaatttattatttcttcttgttgtaatttttatcattcctttttctattggactgtcacatggaattgaatctggaatctttccatgccctcattttttttttttttttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
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-----------------------------------------ttattct-gttatgatgaaagaaaatgaactattccaga----tagatgttcagtttttggattagtttggtggcttactgatttctttctgtaatatttttcagGTTCTCTACTGTTTTCAATCATGATAATGATTCACTACCTAGAGTTTGGACTGGGAAGGAAGATGTCAGAGCTATTACAAGGGATGCTCGCTCTGCG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G45160.1 (Arabidopsis thaliana), 3'ss of exon 17
gtagcaattttttctgtgaaatttattatttcttcttgttgtaatttttatcattcctttttctattggactgtcacatggaattgaatctggaatctttccatgccctcattttttttttttt--tttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
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----------------------------------------------------------------gtaagaaaaaagaacagagtacactcctaatattggcctctttttcagtttcctctgcttgatattattccaaacacatattagGTTCTCAACAGTCTTCAGTCATGACAAAGACTCAATGCCACGGGTCTGGACTGGAAAAGAGGATATTAGAGCAATCACAAAAGATGCTCGAGCAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaatctttccatgccctcattttttttttttttttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
ttttc CT-rich tract
tcattttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagcaattttttctgtgaaatttattatttcttcttgttgtaatttttatcattcctttttctattggactgtcacatggaattgaatctggaatctttccatgccctcattttttttttttttttttttttggaaaattttcagGTTCTCAACAGTCTTCAATCATGATCATGATTCAATGCCAAGGGTTTGGACAGGGAAGGAAAATATTAGAATAATCACAAAGGATGCTTACTCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG