1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttttcaataaactagtggcactgctctatttttagaattttgacttctttgatgccttactaacgtgaagtatgtgtggttctaatttgtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATACATGTCCCTGGATCAGATCTCTCCCTTGACGTTTAGCATAGGAAACACG
species | Vitis vinifera |
transcript | Vv10s0116g00760.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATG GTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATAEST: gi|110705801|gb|EE083063.1|EE083063
genomic: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATGgtaaatacaa ... gtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATA
EST: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATG GTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATAEST: gi|110685525|gb|EE062319.1|EE062319
genomic: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATGgtaaatacaa ... gtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATA
EST: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATG GTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATAEST: gi|110419876|gb|EC986130.1|EC986130
genomic: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATGgtaaatacaa ... gtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATA
EST: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATG GTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATA
genomic: GCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATGgtaaatacaa ... gtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATA
cttctttgatgccttactaacgtgaagtatgtgtggttctaatttgtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATACATGTCCCTGGATCAGATCTCTCCCTTGACGTTTAGCATAGGAAACACG
taatttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttcaataaactagtggcactgctctatttttagaattttgacttctttgatgccttactaacgtgaagtatgtgtggttctaatttgtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATACATGTCCCTGGATCAGATCTCTCCCTTGACGTTTAGCATAGGAAACACG
- - - -aataaac
- - - - - - - - - -gcactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg