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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggaaagagacaatgtgttgatgtttatctcagtttgaagtgagaagctagcgtgatggtttaattgacttaatgtaatctttggttacagATTGATAGGATTTCTGGGATTGCAGCCAAGTATGTTGGGAAGCCCATGGTTTCATATCCTCATCTTTCTACCCACACATCATCCCGGTCCCTCGATCTTG

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 3
--gtaatggaaagagacaatgtgttgatgtttatctcagtttgaagtgagaagctagcgtgatggtttaattgacttaatgtaatctttggttacagATTGATAGGATTTCTGGGATTGCAGCCAAGTATGTTGGGAAGCCCATGGTT---TCATATCCTCATCTTTC-TACCCACACATCATCCCGGTCCCTCGATCTTG
     |   ||  |     |  ||| |      ||   |||     |       |  | | ||    |||   | ||| | |   ||||   | ||||||||||||||||| || ||||| |||||||| ||||| |||||  ||  |   || ||  |  | ||||| |  |   | | || ||  || ||| | |    
gtaccacaaaagaaactcgttagttaacacgcgtccttgttccttttttttttttttcttaatcaaataaccaagttagttt---cttttacttcagATTGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAGCCAGTGACTTCTTCGTACTCCAACCTTTCATCTCTGAATAACAACCACGTGCCT-GTTG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtgagaagctagcgtgatggtttaattgacttaatgtaatctttggttacagATTGATAGGATTTCTGGGATTGCAGCCAAGTATGTTGGGAAGCCCATGGTTTCATATCCTCATCTTTCTACCCACACATCATCCCGGTCCCTCGATCTTG
                                          tcttt  CT-rich tract
                       tttaattgacttaat  TA-rich tract