1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtccacataaaatgctcattctgcagttattcaatttatatgacctgattctaagtaatgcatttctcatcattcctgtgtggttttcatttcatacagCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAGTACAAAGAGCAAGTGTGGTCAAGAGGCGCTCAAGTGATGAAT
species | Vitis vinifera |
transcript | Vv10s0116g00050.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ctgattctaagtaatgcatttctcatcattcctgtgtggttttcatttcatacagCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAGTACAAAGAGCAAGTGTGGTCAAGAGGCGCTCAAGTGATGAAT
acctgat putative branch site (score: 4)
ttttcatttc putative PPT
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtccacataaaatgctcattctgcagttattcaatttatatgacctgattctaagtaatgcatttctcatcattcctgtgtggttttcatttcatacagCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAGTACAAAGAGCAAGTGTGGTCAAGAGGCGCTCAAGTGATGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -ccacata
- - - - - -aatgctc
- - - - - - - - - - tctgcag
- - - - - - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaatgc