Sequence
atgc intronic sequence ATGC exonic sequence...tgtaatgatgtgatggttgcaatttttatgtggttaaatatcccattggtcttaattcaaatccaaccgaggagctgatgattctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g56320.1 (Oryza sativa), 3'ss of exon 3
tgtaatgatgtgatggttgcaatttttatgtggttaaatatcccattggtcttaattcaaatccaaccgaggagctgatg---attctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
| ||| | || || |||| | | || | || | | | | | ||||| ||| | | ||||| || || |||||||| ||||| || || ||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||||||||||||||||||
--catagatatttcatttacatttttcactccatatgtcattgtggctctttttttgtcagcatatctgtttt-ctgatatatattttttgtacatcgtacagCCATACAGCATCCATAGCAGCTGGTAATCATGGAATTCCTGTTGTTGTGGCTGGGCATCATTTTGGGAATGCAAGTGGAATGGCTCCTCGTGCACA
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 2
tgtaatgatgtgatggttgcaatttttatgtggttaaatatcccat-tggtcttaattcaaatccaaccgaggagctgatgattctaa--tcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
| || | | ||| | | | | ||| |||| || || || | || |||||||| | | | |||||||| || ||||||||||| || || || ||||| ||||| || || ||||| |||||||| ||||||||||| || || |||||||||||||||||
agcaaatgcattgaaaaagaaataaaaaccatgctgtaggaatcatgtggtattccttgaatactttttttt---cttccgattctaagatttgtgtctacagGCATACAGCATCCATTGCTGCTGGCAATCATGGAATTCCTGTTGTTGTGGCTGGGCATCAATTTGGAAATGCAAGCGGCATGGCTCCTCGTGCACA
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G21920.1 (Glycine max), 3'ss of exon 3
tgtaatgatgtgatggttgc-aatttttatgtggttaaatat--cccattggtcttaattcaaatccaaccgaggagctgatg-attctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
|| || | | || ||| || | | | | || || ||| ||| | ||| | ||| | | ||| |||| ||||||| || ||||| |||||||||| |||||||||||||||||| | || || || ||||||||||| ||||| ||||| |||||||||||| ||||
----cctattggaccatcaccaaatttgatttaatcacacatagttagttatctttacttctcttttaactaaatgcctgttctgatgtaactaaaatacacagGCATACAGCATCTGTTGCAGCAGGAAACCATGGGATTCCAGTGATTGTTGCTGGACATCACTTTGGGAATGCTAGTGGGATGGCTCCTCGTTCACA
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G09850.1 (Glycine max), 3'ss of exon 3
tgtaatgatgtgatggttgcaatttttatgtggttaaatatcccattggtcttaattcaaatccaaccgaggagctgatg-attctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
|| || || | | ||| | | | ||| || ||| ||| | ||| | | | | ||| ||| |||||||||| ||||| |||||||||| |||||||||||||||||| | || || || ||||||||||| ||||| || || |||||||||||| ||||
-atattggactgttaccaaatttgttttaatcataacataattagttatgtttacttctcttttaactaaattcccattctgatgtaactaacatacacagGCACACAGCATCTGTTGCAGCAGGAAACCATGGGATTCCAGTGATTGTTGCTGGACATCACTTTGGGAATGCTAGCGGGATGGCTCCTCGTTCACA
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G13590.1 (Glycine max), 3'ss of exon 3
tgtaatgatgtgatggttgcaatttttatgtg-gttaaatatccca---ttggtcttaattcaaatccaaccgaggagctgatg-attctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
|| |||| ||| | ||| ||| | | | | | | || | ||| || | || || | | | || | ||| ||||||||| || || || ||||||| || |||||||| ||||||||||| || || ||||| ||||||||||| ||||| |||||||||| | ||||
-----aaatatgatagttattttaattaagtgtgccacaaaactaaaacttcattttacttgctttttcactgaatgtccattctgatatatccataacatacagGCATACAGCTTCTGTTGCAGCTGGAAACCATGGAATTCCAGTGGTCGTTGCTGGGCAATTTTTTGGAAATGCTAGTGGGATGGCTCCTCATTCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtcttaattcaaatccaaccgaggagctgatgattctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
attctaatcttaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaatgatgtgatggttgcaatttttatgtggttaaatatcccattggtcttaattcaaatccaaccgaggagctgatgattctaatcttaatatacagGCACACGGCATCCATTGCAGCAGGGAACCATGGGATTCCAGTGGTGGTGGCCGGGCATCACTTTGGAAATGCGAGTGGAATGGCTCCTCGTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aattcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga