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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacattagactttgggtgtttaatatatgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA

Basic information

species Vitis vinifera
transcript Vv10s0071g01150.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 3
----------------------------------------------------gtatgcacattagactttgggtgtttaata-tatgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                                     | |  | ||  || |     || ||  || |||    | | | ||    | ||  |||    |  || |     ||||  |     |    | ||||| | |  |||||| |||||||||||||| || || ||||| ||||| || || || |||||||| ||||| || |||||||| || || || |||||||||||||| ||
gtacgtgaatgcgaatgccttttgctgttgcatatatacctgaccacattccttgtctatatgtgaatgcaaatgctttttactatcgcatgtatactgactacattctgt--gtcctatcttatttgattagcaccacttgatttgttttgtatgcagTTGTCCGCACGCTTACTGGACATAGGTCAAACTGCATGTCAGTTGATTTCCATCCTTTTGGAGAATTCTTTGCCTCGGGGTCACTGGACACAAATCTGAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 3
gtatgcacattagactttgggtgtttaatatatgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                    || |  || ||||||||  |   |||   |||| |  |  |       |  ||  ||| | | || |    | ||||  | |  |||||| || || |||||||| || ||||||||||| || || || || |||||||| |||||||| |||||||| ||||| ||  ||||||| ||||| ||
--------------------gtatgcaa-atatgaatatttaacttactatatat-atgcatgaatcgttgagtaattctatcttttggc-tcgtttcctatgcagTTGTCCGTACTCTTACTGGACATAGATCAAATTGTATGTCAGTTGATTTCCATCCTTTTGGGGAATTCTTTGCCTCTGGGTCATTGGACACTAATCTGAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G00890.1 (Glycine max), 3'ss of exon 4
------------------------------------gtatgcacattagactttgggtgtttaatat-atgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                      |  |  || | |       ||  || | | |  |||| | |||  |   |      | ||  |  ||  | |||  |||   |||  ||||  || ||||  |||||||||| || |||||||| || || || ||||| | ||| |||||||||||||| ||||| ||||||||||||||||| ||| | ||||| ||||||||
gtacgcggttgcttgccatttcttttaatggttttaaaacaccaatgaaaaaagatttgaatagtctcacaaatttttttcagtattttcaccataaattttttaaattgagtctttgacttgctatgt--ttctttg-gtagTTGTTCGTACTCTTACTGGTCATAGGTCCAATTGTACATCAGTGGACTTCCATCCTTTTGGAGAGTTCTTTGCATCTGGTTCTTTAGACACTAATCTTAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 4
------------------------------------gtatgcacattagactttgggtgtttaatat-atgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                      |  |  || | |       ||  || | | |  || | | ||| ||   | |    | ||| |  ||  | |    |||   |||  ||||  || ||||  |||||||||| || |||||  | || || || ||||| | ||| |||||||||||||| ||||| ||||||||||||||||| ||| | || || ||||||||
gtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgt--ttctttg-gtagTTGTTCGTACTCTTACCAGTCATAGGTCCAATTGTACATCAGTGGACTTCCATCCTTTTGGAGAGTTCTTTGCATCTGGTTCTTTAGATACTAATCTTAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 4
gtatgcacattagactttgggtgtttaatatatgaattctgttct-tttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
          ||   ||||    |  || | |  | |  | ||    | ||| ||   ||       ||  ||    || | |      |  || ||| |||  |||||||  | || || ||||| ||||| || |||||||| || ||||| ||||| || ||||| ||||| ||||| || ||||| || ||||||||||||||
---------gtaagttttgtagttccaagagaccattcttattggactcgatttgac-ttctgtgagtacttacgtgttctttc-----acttgctttgttgagtagTTGTCAGGACTCTCACTGGTCACAGGTCCAATTGCATCTCAGTGGATTTCCACCCTTTTGGTGAGTTTTTTGCGTCAGGCTCACTAGACACAAATCTTAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------gtatgcacattagactttgggtgtttaatata-tgaattctgtt---cttttgata------tgttgttaaactgatatctagagattttctgttgtaa-----tgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                                   |  | |  ||| ||  | |  ||| ||| |||    ||||| |    |||||||          ||| |    |||| |   ||| |  ||  ||         | |        ||  |||||| ||||| ||||| || ||| ||||||||||||||||||| || |||||||| || || ||||||||||| || || ||| |||| |||||||| ||
gtaagcttgcgaatgtcatctcctaggatatcagttgctttttattaacttgcgttcctattgga--tggattgtataacataactcattctatcttacttttgacggagatccattgctcttttgatctgatgaggtgctcgattactgacccgtataagcgcgagtgcagTTGTACGCACTCTTACAGGTCACCGATCAAATTGCATATCTGTAGATTTCCATCCTTTCGGAGAGTTCTTTGCGTCGGGATCTTTGGATACAAATCTCAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ20167 (Selaginella moellendorffii), 3'ss of exon 3
gtatgcacattagactttgggtgtttaatatatgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                       |  || | |||    ||  |         ||||     |    |||  | | || |||||| ||  ||||| || || || || || ||  | || || ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| ||
--------------------------------------gtaatcgtgtgaggcatttctcgtaccgcttctaa----tgcacgtttcactttgttttttttta--gTTGTCCGGACACTCACAGGTCATCGGTCTAACTGCATTTCTGTCGACTTTCATCCGTTTGGAGAGTTCTTTGCGTCTGGATCTCTCGACACCAATCTGAA

upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ23110 (Selaginella moellendorffii), 3'ss of exon 3
gtatgcacattagactttgggtgtttaatatatgaattctgttcttttgatatgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
                                       |  || | |||    ||  |         ||||     |    |||  | | || ||||||   ||||||| || || || || || ||  | || || ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| ||
--------------------------------------gtaatcgtgtgaggcatttctcgtaccgcttctaa----tgcacgtttcactttgttttttt---tagTTGTCCGGACACTCACAGGTCATCGGTCTAACTGCATTTCTGTCGACTTTCATCCGTTTGGAGAGTTCTTTGCGTCTGGATCTCTCGACACCAATCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgttaaactgatatctagagattttctgttgtaatgtggttttttgtatagTTGTTCGCACGCTTACTGGCCACAGATCAAATTGCATATCTGTGGACTTCCATCCATTTGGGGAGTTCTTTGCATCTGGCTCTCTGGACACAAATCTTAA
         aactgat  putative branch site (score: 3)
                                           ttttttgt  putative PPT
                                           ttttttgtata  TA-rich tract