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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaaatcaaacaactctgtatatattgtttattgggatttttccacataataaccaaccacaaatttcaatttcttgctgattagATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721026|gb|FC069980.1|FC069980
EST:     TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAG                         ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
genomic: TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAGgtatgttgaa ... tgctgattagATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
EST: gi|294965582|gb|GW837181.1|GW837181
EST:     TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAG                         ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
genomic: TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAGgtatgttgaa ... tgctgattagATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
EST: gi|161717651|gb|FC066276.1|FC066276
EST:     TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAG                         ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
genomic: TCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAGgtatgttgaa ... tgctgattagATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgggatttttccacataataaccaaccacaaatttcaatttcttgctgattagATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG
                 taataac  putative branch site (score: 1)
                                        tttcttgct  putative PPT
                               aaatttcaatttctt  TA-rich tract