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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatatctttctctagctataaaatctagttactgtgtagttaaaattagggtgcaagaaaaaaatttgattttagtttctctaactcctgcagAAATTCAAGCCTGAGATCATGGTTGAGTGTCTAACTTCTGATTTTCGAGGTGACTTGAGTGCTGTAGAAACTCTGGTGCACTCAGGGTTAGATGTTTTTG

Basic information

species Vitis vinifera
transcript Vv10s0071g01020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G24430.1 (Glycine max), 3'ss of exon 3
gttcatatctttctctagctataaaatctagtt-actgtgtagtt---aaaat-tagggtgcaagaaa--aaaatttgatt-ttagtttctctaactcct--gcagAAATTCAAGCCTGAGATCATGGTTGAGTGTCTAACTTCTGATTTTCGAGGTGACTTGAGTGCTGTAGAAACTCTGGTGCACTCAGGGTTAGATGTTTTTG
       |  || | |     |||||| | ||| |   || | ||   || || ||   | |||      || |  || |  || || | | ||| | ||  ||||||  |||| || |||||||||||||||||| |||||||||||||||| |||||| |||  ||||||||||||||||| |||||||| |||||||| ||||
------gtgcttttgttatattaaaatgttgtttataatgcattttacaagatatacaatacaaattgctaatacatgctaatttgtctttataattgctttgcagAATCTCAAACCCGAGATCATGGTTGAGTGTTTAACTTCTGATTTTCGGGGTGACCTGAAGGCTGTAGAAACTCTGGTTCACTCAGGTTTAGATGTCTTTG

upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G42600.1 (Glycine max), 3'ss of exon 5
----gttcatatctttctctagc-tataaaatctagttactgtgtagttaaaattagggtgcaagaaaaaaatttgattttagtttctctaactcc--tgcagAAATTCAAGCCTGAGATCATGGTTGAGTGTCTAACTTCTGATTTTCGAGGTGACTTGAGTGCTGTAGAAACTCTGGTGCACTCAGGGTTAGATGTTTTTG
     || |||| ||    |    | || |||  | ||     |   |  ||   |   ||| |  | |     | ||| | || ||| ||| | |  |||||||  |||| ||||||||||||||||||||| |||||||||||||||| |||||| |||  |||||||||| |||||| |||||||| |||||||| ||||
gtgctttgatatattggaatgttgtttataattcattttagaaggtatacaatgcaaattgctaatacatg--ctaattgttgtctctataattgctttgcagAATCTCAAACCTGAGATCATGGTTGAGTGTTTAACTTCTGATTTTCGGGGTGACCTGAAGGCTGTAGAAATTCTGGTTCACTCAGGTTTAGATGTCTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaaattagggtgcaagaaaaaaatttgattttagtttctctaactcctgcagAAATTCAAGCCTGAGATCATGGTTGAGTGTCTAACTTCTGATTTTCGAGGTGACTTGAGTGCTGTAGAAACTCTGGTGCACTCAGGGTTAGATGTTTTTG
                                        ctctaac  putative branch site (score: 2)
                                     tttctctaactcct  CT-rich tract
                   aaaaaaatttgatttt  TA-rich tract