1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...actacatctttttgtttttggttttcccatgaggtatgaaactagtgaaaagttttgcttcatgtgggaacctgctgacaataaatgttcatttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG
species | Vitis vinifera |
transcript | Vv10s0003g03500.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACC GCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGEST: gi|110732627|gb|EE108077.1|EE108077
genomic: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACCgtatgattca ... atttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGG
EST: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACC GCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCCGACATGCGTGCCTTAGGEST: gi|37189203|gb|CF608552.1|CF608552
genomic: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACCgtatgattca ... atttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGG
EST: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACC GCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCCGACATGCGTGCCTTAGG
genomic: GGATCAGCCAACGGCAATGGGGTTCTGTCAGATAGATATGATGAGAAACCgtatgattca ... atttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGG
tgaaaagttttgcttcatgtgggaacctgctgacaataaatgttcatttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG
tgctgac putative branch site (score: 2)
ttcattt putative PPT
aataaatgttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacatctttttgtttttggttttcccatgaggtatgaaactagtgaaaagttttgcttcatgtgggaacctgctgacaataaatgttcatttgttcagGCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG
- - - - - - - - - - - - -cccatga
- - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - -tgaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaat