Sequence
atgc intronic sequence ATGC exonic sequence...tggtaaaagaaatcatgtgtcattggaaagaatgccaccatgcttaatcataaccttctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G150201_T03 (Zea mays), 3'ss of exon 3
--------tggtaaaagaaatcatgtgtcattgga--aagaatgcca-------ccatgcttaatcataacctt----ctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
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gtatgcagttgtggctgagcatctgttttctcgcactcatattcttagtctcttctttatctggccaagattttgtgacctttcttgtgttgtggtagcactgaatttcttcatattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCAAGAGAAAAGCTCTTGAGACTAATTTGTTAACTGATGAAGATATAGAAA
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G150201_T02 (Zea mays), 3'ss of exon 2
-tggtaaaagaaatcatgtgtcattggaaagaatgccaccatgcttaatcataaccttctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
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tctgttttctcgcactcatattcttagtctcttctttatctggccaagattttgtgacctttct-tgtgttgtggtagcactgaatttcttcatattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCAAGAGAAAAGCTCTTGAGACTAATTTGTTAACTGATGAAGATATAGAAA
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10130.1 (Glycine max), 3'ss of exon 3
tggtaaaagaaatcatgtgtc---attggaaagaatgccaccatgcttaatcataacct-tctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
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--aaaattcaagttatgtgctttgatcataagtaagaggtgtctggtaaatgttgacatgtatctactaacattgatgtaaaatttgatg-ctgccct-ttcagGTGTGTTTCCTACCTGGTACACTTGCAATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGAAAAACAATATGCTTAACTTTGAAGACCTAGAAA
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G28910.1 (Glycine max), 3'ss of exon 3
tggtaaaagaaatcatgt-gtcattggaaagaa-tgccaccatgcttaatcataaccttctttttgcatc-ctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
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tagaaaactatcttttcttgtcataattaagaggtggtgcc-tggttaatgttgatatgcatctactaacattgatgtaaaatttgatg-ctgccct-ttcagGTGTGTTTCCTACCTGGTACACTTGCAATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGGAAAACAATATGCTTAACTTTGAAGACCTAGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134610|gb|CB919948.1|CB919948EST: AATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTG GTCTGTTTCCTGCCTGGTACTCTTGCACTTGGT
genomic: AATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggtt ... ccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcataaccttctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
ccctgttt CT-rich tract
ttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggtaaaagaaatcatgtgtcattggaaagaatgccaccatgcttaatcataaccttctttttgcatcctgttctaatagtgtataactgccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGTGCCACTAAAGGTATTACAAAGGAAAAAGCTATGAAAGACAATTTGCTTACCTTTGAAGACCTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -aaagaaa
- - - - - - -catgtgt
- - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - -gccacca