Sequence
atgc intronic sequence ATGC exonic sequencegtaaccagttcattatctttccaattgcagaagtttcagtttcatcctgtgactacttttgtgtttggtctttacactaatgaaagacgtttatgctttgatcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g02910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G25830.1 (Glycine max), 3'ss of exon 1
gtaaccagttcattatctttccaattgcagaagtt--tcagtttcatcctgtgactacttttgt-gtttggtctttacacta-atgaaagacgtttatgctttga-----tcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
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--------------ttgtttccaatcctcttagcttattaactttgtacaccgtaagtttttattatataaatttcacactctaaacaagatatttctgctgtgtaattctcagAATTTGCTTACATGAGGAAAGTAACCACTAAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGGCTCTC
upper sequence: Vv10s0003g02910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G08810.1 (Glycine max), 3'ss of exon 3
gtaaccagttcattatctttccaattgcagaagtttcagtttcatcctgtgactacttttgtgtttggtctttacactaatgaaagacgtttatgctttgatcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
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--actttgtttccaatcctcttagcttattaactttg---tacacccaaagtctttttataaatttcacgctctaaacaaggtatttctgctgtgtaattctcagAATTTGCCTACATGAGGAAAGTAACAACTGAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCGACAGGACTCTC
upper sequence: Vv10s0003g02910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G25820.1 (Glycine max), 3'ss of exon 7
gtaaccagttcattatctttccaattgcagaagtttcagtttcatcctgtgactacttttgtgtttggtctttacactaatgaaagacgtttatgctttga-----tcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
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---------taactttgtttgcagtcctctagcttattgacttagcatacccaaatttttttataaattccactctctaa-acaggatatttttgctgtgtaattttcagAATTTTCCTACATGAGGAAAGTAACAACTAAAGCAGATGTGTTCAGCTTCGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGACCGACAGGACTCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gactacttttgtgtttggtctttacactaatgaaagacgtttatgctttgatcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
cactaat putative branch site (score: 2)
taatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaccagttcattatctttccaattgcagaagtttcagtttcatcctgtgactacttttgtgtttggtctttacactaatgaaagacgtttatgctttgatcagAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG