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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaaagtaattcatactttctccaaatatgtatttcatggcaacatacttctcataatttggaggactgtgcaattagctcttaaaaatctgttccaaataaatgatctagtttacaatagtaacttaccatttgcgtttattctttacaatctgtatggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACA

Basic information

species Vitis vinifera
transcript Vv10s0003g02590.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G12810.1 (Glycine max), 3'ss of exon 3
gtgaaaaagtaattcatactttctccaaatatgtatttcatggcaacatacttctcataatttggaggactgtgcaattagctcttaaaaatctgttccaaataaatgatctagtttacaatagtaacttaccatttgcgtttattctt---tacaatctgtatggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACA
                           || ||    ||  | |   | |  |||   || ||||        ||  |  |  | || |  |    ||  ||  |  ||    |||||    || | |||||  |||||  |  || ||     ||||||   |||||   ||||||||||  | |||||||||||||| | |||||| || || |||| || ||| |||||  |||||| |||||||||  ||||||||||||  |  || ||
------------------------gtgaagattagctt--ttgtttcctttttcctttactttgactagtcttgatagcatgtgttcagga---attagaagcacctg--taagttttgtttattgacttatgatttgattaaatcctcataaacaatccccatggtagacagGAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77579639|gb|DV218672.1|DV218672
EST:     TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|161714829|gb|FC063277.1|FC063277
EST:     TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|351045795|gb|FQ440980.1|FQ440980
EST:     CAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: CAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|110384739|gb|EC949198.1|EC949198
EST:     TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|349832459|gb|FQ421020.1|FQ421020
EST:     CAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: CAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|110693825|gb|EE070405.1|EE070405
EST:     TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|349808085|gb|FQ402476.1|FQ402476
EST:     CAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: CAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
EST: gi|110391854|gb|EC956857.1|EC956857
EST:     TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAG                         GAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG
genomic: TAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagt ... tggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaatagtaacttaccatttgcgtttattctttacaatctgtatggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACA
                         tttattctttacaat  TA-rich tract