1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaaaagaaagaaaataaaaggcacacacaacactaaacagtaagtagaactcaaggaaaaatgcccctttttaaccaactgccgcgtcctattttgcagATTCTGAGCAACGGAGTGTACACTAGCATAGAGCACCGGGCAACAGTAAATGCAGCAAAAGAGAGGATCTCCATTGCCATGTTCTTCAACCCCAAATCCT
species | Vitis vinifera |
transcript | Vv10s0003g02290.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tagaactcaaggaaaaatgcccctttttaaccaactgccgcgtcctattttgcagATTCTGAGCAACGGAGTGTACACTAGCATAGAGCACCGGGCAACAGTAAATGCAGCAAAAGAGAGGATCTCCATTGCCATGTTCTTCAACCCCAAATCCT
ttttaac putative branch site (score: 2)
tcctatttt putative PPT
tttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaagaaagaaaataaaaggcacacacaacactaaacagtaagtagaactcaaggaaaaatgcccctttttaaccaactgccgcgtcctattttgcagATTCTGAGCAACGGAGTGTACACTAGCATAGAGCACCGGGCAACAGTAAATGCAGCAAAAGAGAGGATCTCCATTGCCATGTTCTTCAACCCCAAATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -aaagaaa
- - - - - -aaaataa
- - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - -ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - -gaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaact