1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctgatacttacattccaaatgtcaaaacactgtaccttggttatttagttaattttcatccattaatatgtaatttaactggacaaagtaatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT
species | Vitis vinifera |
transcript | Vv10s0003g02060.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAG GGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGEST: gi|30255070|gb|CB971517.1|CB971517
genomic: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAGgtaatccatt ... aatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGG
EST: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAG GGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGEST: gi|71859913|gb|DT008968.1|DT008968
genomic: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAGgtaatccatt ... aatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGG
EST: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAG GGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGEST: gi|71890043|gb|DT039098.1|DT039098
genomic: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAGgtaatccatt ... aatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGG
EST: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAG GGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGG
genomic: AAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAGgtaatccatt ... aatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGG
ttagttaattttcatccattaatatgtaatttaactggacaaagtaatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT
atttaac putative branch site (score: 3)
taattttcatccatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgatacttacattccaaatgtcaaaacactgtaccttggttatttagttaattttcatccattaatatgtaatttaactggacaaagtaatatcccagGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-ctgatac
- - - - - acattcc
- - - - - - - - - - - -caaaaca
- - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa