1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacacatgtttgcaccatatatcacataagcaaaaagagacataaacttgtatttaatatactttgggataaacttccaactaatatattcaatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG
species | Vitis vinifera |
transcript | Vv10s0003g01700.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTACTTCACGGAEST: gi|30298685|gb|CB975479.1|CB975479
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCTTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|110720994|gb|EE097488.1|EE097488
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGAGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|110686747|gb|EE064739.1|EE064739
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGAGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|110703644|gb|EE080669.1|EE080669
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGAGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|30298746|gb|CB975540.1|CB975540
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCTTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|110688848|gb|EE067872.1|EE067872
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGAGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|110687293|gb|EE064579.1|EE064579
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGG GGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAEST: gi|351040756|gb|FQ438300.1|FQ438300
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
EST: CGCACTGGAAATGTGGACAATTTGACGGGGCAATATGNNNNNNNNCTTGG GGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
genomic: CGCAGTGGAAATGTGGACAATTTGACGGGGCAATATGTTTTCTTTCTTGGgtatgtattt ... caatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGA
acttgtatttaatatactttgggataaacttccaactaatatattcaatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG
aactaat putative branch site (score: 2)
tatttaatatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacatgtttgcaccatatatcacataagcaaaaagagacataaacttgtatttaatatactttgggataaacttccaactaatatattcaatctgcagGGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-acacatg
- - - - - tgcacca
- - - - - - - - - - - cacataa
- - - - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - cataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaat