1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttttaacttctaattttttttttctttttttttttgtgttaatagctaaacggaattataattttgtttcaaaagccttcttttttattaaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAAGCTTTCTGCGCTTCAAACTCTCGACCTTTCAGATAACCAGTTCATTGGT
species | Vitis vinifera |
transcript | Vv10s0003g01490.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT GTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAAEST: gi|110713153|gb|EE088826.1|EE088826
genomic: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTgtaagcttat ... aaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
EST: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT GTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
genomic: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTgtaagcttat ... aaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
gctaaacggaattataattttgtttcaaaagccttcttttttattaaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAAGCTTTCTGCGCTTCAAACTCTCGACCTTTCAGATAACCAGTTCATTGGT
tattaac putative branch site (score: 1)
ccttcttttttatta CT-rich tract
aattataattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaacttctaattttttttttctttttttttttgtgttaatagctaaacggaattataattttgtttcaaaagccttcttttttattaaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAAGCTTTCTGCGCTTCAAACTCTCGACCTTTCAGATAACCAGTTCATTGGT
- - - - - - - - - - - - - - - - - - - - - - - - aaacgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcaaaa