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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtactatgaaatgctaaatagctctccgagttccagaattagttttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT

Basic information

species Vitis vinifera
transcript Vv10s0003g01240.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
---ttgtactatgaaat-gctaa-atagctctccgagttccagaattagttttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT
   ||  |  | |  ||  || | || | | |    ||| ||  |      |  |    |  |  | ||    ||||| |||        | ||     |||||| | ||||| || || ||||||||||| ||| | |||||||||||||| ||  ||||  |||| |||||||||||||| ||||| ||||||||| ||||||
catttagatgaagtcatcactgatatggatttggctgtttcatcaccgaagtatttt--tccacctgttc---atatttatctgaacaattcataaatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G29080.7 (Glycine max), 3'ss of exon 3
ttgtactatgaaatgctaaatagctctccgagttccagaattagtt-ttgtcaagttgagttatttgaa-atattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT
|  |       || ||   |  | | |  || ||      ||||||   |  |  ||     | |||   || || |||        | ||     ||||||   ||||| || || || |||||||| ||| |  ||||||||||||| ||  ||||  |||| |||||||||||||| ||||| ||||||||| ||||||
tcatttagatgaaggcatcactgatat--gaatttggctgttagttaccgaaatatttttccacttgttcatgtttatctgaacaattcataaatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------------ttgtactatgaaatgctaaatagctc-----tccga-gttccagaattagttttgtcaagttgagt----tatttgaaatattcatccatttg----------tgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT
                                                                       ||||  |   || || |   ||| |      || |  | |   |    ||| ||||| | || |||    |   ||  ||    |   |  ||          ||||| |  || ||||| | || ||||  ||||||| | | || ||  | || || ||||| ||||| |||||  ||||||||||||||||||| || || ||||| ||| ||||||
gtgtgtctacgtgggggtgattgggtgttgtgctgagtaatatagtgagcttgggtggttggcactgcagcttgtggtgataactgttgtctagtttctgtatctggcggtggtggcgcagtgttgtccaattaagtgggctgcgtggcatgagtagtaacgtgacggaggtgatgtgaatacgtgtgcagGCTGCATCTAATACAGCAGTGACAGACTTGGCGCCAACTCATCCGATTCGGCTGGGACTGGCCTTGAACTTCTCTGTCTTCTATTATGAGATTTTGAACT

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------------------------------------------------ttgt-actatgaaatgctaaatagctctccgagttccagaattagttttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT
                                                                                               || || ||    |     |  || |   | ||        | |  | ||    |||   |  |    | || ||   | | || ||     || ||||| | || || |  || |||| | | ||  |  | || || ||||| || |||||||| || || ||||||||||| || ||||| ||||||||| ||||||
gtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGACTGGGATTAGCTTTGAACTTCTCGGTCTTTTATTATGAAATTTTGAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809819|gb|FQ398444.1|FQ398444
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110723333|gb|EE100523.1|EE100523
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACAACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|71866787|gb|DT015842.1|DT015842
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351053794|gb|FQ441560.1|FQ441560
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349812444|gb|FQ407063.1|FQ407063
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349808236|gb|FQ403423.1|FQ403423
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGCCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351024890|gb|FQ433307.1|FQ433307
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349828886|gb|FQ419219.1|FQ419219
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351047266|gb|FQ454877.1|FQ454877
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|161717158|gb|FC064700.1|FC064700
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110686512|gb|EE064232.1|EE064232
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|34549980|gb|CF518212.1|CF518212
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351025105|gb|FQ433522.1|FQ433522
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349813283|gb|FQ411523.1|FQ411523
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349816139|gb|FQ399370.1|FQ399370
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351019964|gb|FQ439781.1|FQ439781
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCCGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349811098|gb|FQ406086.1|FQ406086
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|30299169|gb|CB975963.1|CB975963
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351036840|gb|FQ459362.1|FQ459362
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349821467|gb|FQ411088.1|FQ411088
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349823307|gb|FQ402506.1|FQ402506
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349827790|gb|FQ422658.1|FQ422658
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349824616|gb|FQ413283.1|FQ413283
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349821782|gb|FQ408220.1|FQ408220
EST:     CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110719939|gb|EE095488.1|EE095488
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ATAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351030304|gb|FQ432242.1|FQ432242
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110689879|gb|EE066488.1|EE066488
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349826263|gb|FQ416068.1|FQ416068
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351029922|gb|FQ427762.1|FQ427762
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|161717280|gb|FC069185.1|FC069185
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351018819|gb|FQ425721.1|FQ425721
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110685470|gb|EE062216.1|EE062216
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|161713990|gb|FC063175.1|FC063175
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349827590|gb|FQ422458.1|FQ422458
EST:     CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|71870436|gb|DT019491.1|DT019491
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351031569|gb|FQ459826.1|FQ459826
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351016120|gb|FQ432075.1|FQ432075
EST:     CTGGGAACGAGAAGAAAGAGACTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349827588|gb|FQ422456.1|FQ422456
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110706390|gb|EE081872.1|EE081872
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACAACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|349828573|gb|FQ417315.1|FQ417315
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCGGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|110710971|gb|EE087636.1|EE087636
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGANAGCTTATCAG                         ATAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
EST: gi|351048670|gb|FQ448944.1|FQ448944
EST:     CTGGGAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG                         ACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA
genomic: CTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAGgtatgtgttg ... gggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT
              ttatttgaaatattca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtactatgaaatgctaaatagctctccgagttccagaattagttttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT

- - - - -gaaatgc
- - - - - - - - - - -agctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga