Sequence
atgc intronic sequence ATGC exonic sequencegtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgagtgattaaattttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g00640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G08610.1 (Glycine max), 3'ss of exon 1
gtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgagtgattaaattttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC-------------------------------
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---------gtcatctccatctcattaccc-cctttcaatccaagttcaacttctcatcagtcattactcatcttattttacttt-tctaacagATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG
upper sequence: Vv10s0003g00640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G30670.1 (Glycine max), 3'ss of exon 2
gtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgag--tgattaaat--tttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC-------------------------------
| ||| ||| | || || || || |||| ||| | || || | || | | || ||||||||| ||||| ||||| |||||| ||||||||||||| | ||| |||| ||| |||||||| ||
---------------------gtctttaccccctttcaatccaatttcaacttctcattactcattactcaacttatctttactttattaattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaatttaaatttctattatgaatttttgaatttgagtgattaaattttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC
atttaaatttctatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgagtgattaaattttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA