Sequence
atgc intronic sequence ATGC exonic sequence...ttataatttccaactcccctatacatcaatgctgagttttcttgacagtatatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g00350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G08480.2 (Glycine max), 3'ss of exon 3
---ttataatttccaactcccct-atacatcaatgctgagttttcttgacagtatatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
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gaagagagatgtagagatcaagagagagagaaatgaaagatatgatagctagattatgca--atgcgagagatatgagaaat-tgttcaatg-aaacaatgcagGTGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGAACGAGGAAAAGAAGAAAAGTTCACACTGATGATGA
upper sequence: Vv10s0003g00350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G30800.2 (Glycine max), 3'ss of exon 3
--ttataattt-ccaactcccctatacatcaatgctg--agttttcttgacagtatatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
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tgttgtgttttatgaatatgcataaatctcataaccagaagattcctttaaaatgcgagagatata-agaaattgttctatatatgaaa---caatat-atgcagGAGTTAGCAAAGATGGGCAGATCCGCCATTTCTTTCACAGGCCCTCAAAAGCATACACGACTGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGATGA
upper sequence: Vv10s0003g00350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G24320.1 (Glycine max), 3'ss of exon 2
ttataatttcca---actcccctatacatcaatgctgagttttcttgacagta-tatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
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gcataaatctcatacatgcactgttatagtagatcgagtttctcttcgcaataataaaagatatatgaaacattaatta-atattc-cgtgaagaat--tgcagGTGTAAGCAAAGATGGACAAATCCGCCACTTCTTTCACAGGCCATCTAAAGCGTACACAACCGGAACAAGGAAAAGAAGAAAGGTTCACACTGATAAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26267025|gb|CA818088.1|CA818088EST: ACTGGAGGGAGAGAATGGAATTTGCTACACTCACCCGGAGAAACTACCAG GAGTAAGCAAAGATGGATTAATTCGTCACTTCTTTCATCGACCTTCAAAGG
genomic: ACTGGAGGGAGAGAATGGAATTTGCTACACTCACCCGGAGAAACTACCAGgtgacttcaa ... gatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtatatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
tcattttctatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttataatttccaactcccctatacatcaatgctgagttttcttgacagtatatgtggcatgcagctcattttctatatatgcacattctggatgatgcagGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -ttccaac
- - - - - - - tccccta
- - - - - - - - - - - - - caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac