Sequence
atgc intronic sequence ATGC exonic sequencegtaaattttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
-------------------------------------------------gtaaattttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
| ||| | | | | | | || | | | | || ||| | | | | || | | ||| |||| | ||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||| ||||| |||||||| | |||||||
gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaat-tcattcaaatacaacattatcat-gttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
--------------------gtaaattttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
| || | | | | | | || |||| | || | | | | | | | || || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||| ||||| | |||||| |||||||||
gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaattttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtaaattttcagtaatggataatgactattcagacaatatgt-cacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
|| | | | | || | | || | | | | | || | | | ||| | || || || |||| || ||||||||||| |||||||| |||||||||| || ||| |||||||||||||||||| ||||||||| |||| |||||||| | |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gtaaattttcagtaatggataatgactattcagacaatatgt-cacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
|| | | | | || | | || | | | | | || | | | ||| | || || || |||| || ||||||||||| |||||||| |||||||||| || ||| |||||||||||||||||| ||||||||| |||| |||||||| | |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
-----------------------------------gtaaattt-tcagtaatggataatgactatt--------cagacaatatgtcacttctgtggggtactgagatcgcttaaattgaa----cagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
|| || | ||||| | | | |||| || | ||| | | | |||| | || || || ||| ||||| || ||||||||||| |||||||| |||||||||| || ||| |||||||||||||||||| ||| ||||| |||| |||||||| | |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaat-gcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 4
------------------------------------gtaaattttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
|| || || || | | | | || | | | | || | | || || ||||| | ||||||||||| ||||||||| |||||||| | || ||| || |||||||||||||| ||| || || |||| |||||||| | |||||||
gtaggtgtcataacaataatgcattaatttgattgtttagccttatgagaaaaattagtttcctcttcaagaaggaaactcattca-actatgctaaacatgtatatgtttttcagGTTCTATGTATGCTTGCTTGTTGGGTTGAAGATCCACAGGGAGATGCCTTTAAGAAGCATCTTGCAAGGGTCTCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
ttaaattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgcttaaattgaacagGTATTGTGTATGCTTGCATGTTGGGTTAAAGATCCAAATGGGGATTATTTCAAGAAGCATCTTGCTAGGATCCCATATTATATATGGGTTACAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG