Sequence
atgc intronic sequence ATGC exonic sequencegtaacacgattgtccgtgttatgagatgtttaaaaggaaaaagaaactctaatcgaagaatgtctcttaaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
--------------------------------------------gtaacacgattgtccgtgttatgagatgttt--aaaaggaaaaagaaactctaatcgaagaatgtct--cttaaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
|| || || || | || | || | | ||| | || ||| || | | || | ||| |||| | |||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||| ||| |||| |||||| ||||| | | |||||||
gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatgttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
-----------gtaacacg--attgtccgtgttatgagatgtttaaaagg---aaaaagaaactctaatcgaagaatgtctct--taaattgag----cagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
||| | | | ||| || | |||| | ||||| | | | || || | || | || | |||| || || |||||||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||| || | || |||||| | ||| | |||||||||
gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaattttgtcaaaca-tgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
--------------------------------------------gtaacacgattgtccgtgttatgagatgtttaaaaggaaa---aagaaactctaatcgaagaatgtctct-taaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
| | || | | | | | || || ||| || | || | | || | |||| | | | || ||||| || |||||||||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| |||| ||||| ||||| | | |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaatgcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtaacacgattgtccgtgttatgagatgtttaaaaggaaaaagaaactctaatcgaagaatgtctcttaaattgagc-agGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
|| | ||| | | |||| |||||| | ||| | || ||| | | | | | || | |||| || |||||||||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| |||| ||||| ||||| | | |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattca-ttcaaatatgacactaacatgcatttttttctagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gtaacacgattgtccgtgttatgagatgtttaaaaggaaaaagaaactctaatcgaagaatgtctcttaaattgagc-agGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
|| | ||| | | |||| |||||| | ||| | || ||| | | | | | || | |||| || |||||||||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| |||| ||||| ||||| | | |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaattca-ttcaaatatgacactaacatgcatttttttctagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 4
-----------------------gtaacacgattgtcc-gtgttatgagatgtttaaa--------aggaaaaagaaactc---taatcgaagaatgtctct-taaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
||| |||||| | |||||||| | | | || ||||||| || | | | || || ||||| | |||||||||||||||||||| ||||||||| | || ||| | || |||||||| ||||| ||| || | ||||| ||||| | | |||||||
gtaggtgtcataacaataatgcattaatttgattgtttagccttatgagaaaaattagtttcctcttcaagaaggaaactcattcaactatgctaaacatgtatatgtttttcagGTTCTATGTATGCTTGCTTGTTGGGTTGAAGATCCACAGGGAGATGCCTTTAAGAAGCATCTTGCAAGGGTCTCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgtttaaaaggaaaaagaaactctaatcgaagaatgtctcttaaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
ctctaat putative branch site (score: 3)
aaaaagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacacgattgtccgtgttatgagatgtttaaaaggaaaaagaaactctaatcgaagaatgtctcttaaattgagcagGTATTGTGTATGCTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTCCCGGATTATATATGGATGGCAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG