Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaataaagttactggagcattgaattttatcttgaaatctattgattgctttcaaacaagcacttcttgattttaatagACAAGAATCGATATGATTGGAGCAGCCTGTGAGAGTGCTGAAAAAGTTCTGGCTGAGACCCGTAAAGCCTATTGTTTTGGTACTCGTCAAGGTCCAACAA

Basic information

species Vitis vinifera
transcript Vv09s0054g00970.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00970.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G31400.1 (Glycine max), 3'ss of exon 1
gtgaaataaagttactggagcattgaattttatcttgaaatctattgattgctttcaaacaagcacttcttgattttaatagACAAGAATCGATATGATTGGAGCAGCCTGTGAGAGTGCTGAAAAAGTTCTGGCTGAGACCCGTAAAGCCTATTGTTTTGGTACTCGTCAAGGTCCAACAA
          || | |  |   |  ||||   ||     ||| ||    |  |  |  |  |  ||| | |||| |    || |  |  | ||| |||||   |||||||||||  |||||||||||||  ||||||| || || ||||||||||| || || ||||||||||| ||| | |
----------gtaattttaaattcaaattgcttc-----atccatgacctaataacctaatatgactccatgatctatccagGCCCGTCTTGATCTGATTTCTGCAGCCTGTGAAGGTGCTGAAAAAGTGTTGGCTGACACTCGCAAAGCCTATTGCTTCGGAACTCGTCAAGGCCCAGCCA

upper sequence: Vv09s0054g00970.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G45020.1 (Glycine max), 3'ss of exon 1
------gtgaaataaagttactggagcattgaattttatcttgaa--atctattgattgctttcaaacaagcacttcttgattttaatagACAAGAATCGATATGATTGGAGCAGCCTGTGAGAGTGCTGAAAAAGTTCTGGCTGAGACCCGTAAAGCCTATTGTTTTGGTACTCGTCAAGGTCCAACAA
       | ||  || |    | ||   ||||||||    |||    ||| |    |      | |  || ||       ||  |   || |  |  | ||| |||||   |||||||||||  |||||||||||||  ||||||| || || |||||||| || || || ||||||||||| ||| |  
gtaattattaatgaatgagctttgaaatttgaatttcgaattgcttcatccacgagtcatgacctattaaccaacctaatatgctt-cagGCCCGTCTTGATCTGATTTCCGCAGCCTGTGAAGGTGCTGAAAAAGTGTTGGCTGACACTCGCAAAGCCTACTGCTTCGGAACTCGTCAAGGCCCAGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatcttgaaatctattgattgctttcaaacaagcacttcttgattttaatagACAAGAATCGATATGATTGGAGCAGCCTGTGAGAGTGCTGAAAAAGTTCTGGCTGAGACCCGTAAAGCCTATTGTTTTGGTACTCGTCAAGGTCCAACAA
                                       ttcttgattttaata  TA-rich tract