Sequence
atgc intronic sequence ATGC exonic sequencegtaattttgttatgctggtttcagtacttttatggattgagcattaaatatggcattttataacttgcttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 3
gtaattttgttatgctggtttcagtacttttatggattgagcattaaatatggcattttataacttgcttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
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---gttacattctatatacttttctccgtctttcaattcttttttgcgtgcttaagctgataagcagtatgtttttttaatagCCTTTGTCCGTGGAGTTGGGTCCTGGAATATTGGGGAATATTTTTGATGGAATTCAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaattttgttatgctggtttcagtacttttatggattgagcat-taaatatggcattttataacttg-cttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
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--gttcgcgagttatttatcttggttttttctagtgttgttcatctgcagctaacat---ataatttgtcctgaatttactacagCCACTTTCTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------gtaattttgttatgctggtttcagtacttttat--ggattgagcattaaatatggcattttataacttgcttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
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tctcaccatttatgcttcttatttttgtgatgttagataatatcctgcaaacaggtttcagggctaattggtgc---tcacagttagtgcctgagtattgcagCCTCTTTCGGTGGAGCTAGGTCCAGGTATTTTGGAGAATATTTTTGATGGAATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718002|gb|FC067562.1|FC067562EST: AAGAAACAGCTGGGTTGACGGTGAATGACCCTGTTCTACGTACACACAAG CCTCTATCGGTTGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGC
genomic: AAGAAACAGCTGGGTTGACGGTGAATGACCCTGTTCTACGTACACACAAGgtaattttgt ... aaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatggattgagcattaaatatggcattttataacttgcttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
ttataac putative branch site (score: 2)
attttataacttgctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattttgttatgctggtttcagtacttttatggattgagcattaaatatggcattttataacttgcttattaaaattacagCCTCTATCGGTGGAGCTGGGTCCTGGAATTTTGGGAAATATATTTGATGGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT