Sequence
atgc intronic sequence ATGC exonic sequence...attatctgagaatgaccaaacttaagaatgaagtattctcatggttataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 3
attatctgagaatgaccaaacttaagaatga-----agtattctcatggttataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
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----cctacatcctactgttcttgagagttgtacttagtatattgacatctttacctgtcagatttatgctgtattttttattgggtgccttcttgatgttc-agATATCTGATGCCATAAGAGATGGTGCTGAAGGATTTTTTAGGACACAATATGGGACTATTTCTAAAATGGCTTGTATCCTGGCACTTGTCATTCTTGGCA
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 3
----attatctgagaatgacca-aacttaagaatgaagtattctcat-ggttataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
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gtaaatctctttcctataatctcaactcttttatcatgactgcttttcgatttcatcaccatcaacccttgttttcttgtcctgagcttagcatgttgctttctagATATCAGATGCTATACGAGACGGAGCTGAAGGATTTTTCAGGACCCAGTATGGGAGTATATCTAAGATGGCCATGTTGCTTGCCCTTGTTATTCTTTGCA
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G24120.2 (Glycine max), 3'ss of exon 3
attatctgagaatgaccaaacttaagaatgaagtattctcatggttataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
|| || || | | | | |||| || ||| ||| || | || ||||||||||||| || |||||||||||||||| || ||||| || ||||| ||||| || ||||||||||| ||||||| ||| || |||||||| ||||| || || ||||| || ||| |||
--------------gtaaatctctttcctgtaatctcaactcttttatctcacatgaatcctt-gttatctcgtcctgagcttatcatattgctttctagATATCAGACGCTATACGAGACGGAGCTGAAGGATTTTTCAGGACCCAGTATGGGAGTATATCTAAGATGGCCATGTTGCTTGCACTTGTCATTCTTTGCA
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 3
----attatctgagaatgaccaaacttaagaatgaagta-----ttctcatggttataattcagaaattctttgtgaacttg--tcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
| || ||| | ||| |||| || || || | || ||| || ||||| | | | |||| | ||| | |||| |||||||||||||| |||||||||||||| |||||||| ||||| || || ||| | ||||| ||||||||||| || || |||||| ||||||| ||| |||
gtaagctcactcagattatgtggtgttagtcatgatgttgacatttttccttctttgttctcatcaaaaatttgtaattctaatttgtgaggtaattctcttactta-tagATATCAGATGCTATACGTGATGGAGCTGAAGGTTTTTTCAGAACGCAGTATAGCACTATATCCAAGATGGCCATTTTGCTAGCTTTTGTGATTCTTTGCA
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 3'ss of exon 4
attatctgaga-atgaccaaactta---agaatgaagtattctcatggttataattcagaaattctttgtgaact-tgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
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gtaatttcacacaagttttaatttgttctattcgtgattgtgtcttctttgttactcagttgcattttcagttctgtgctatgagcttattctttt-ctgtttagATATCAGATGCTATACGTGATGGAGCTGAAGGATTTTTAAGAACGCAGTATGGTACTATATCCAAAATGGCGTTCTTGCTAGCTTTTGTGATCCTTTGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
ttattccactttct CT-rich tract
ttattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attatctgagaatgaccaaacttaagaatgaagtattctcatggttataattcagaaattctttgtgaacttgtcctgagcttattattccactttctagATATCAGATGCGATACGTGATGGAGCAGAAGGTTTCTTCAGGACCCAATATGGGACTATTTCCAAGATGGCAATGTTACTAGCTCTTGTGATCCTTAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -gagaatg
- - - - - - - -ccaaact
- - - - - - - - - - - - agaatgaa
- - - - - - - - - - - - - - - - - - -ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtcc