Sequence
atgc intronic sequence ATGC exonic sequence...gtttattctccatggaatgtggtctaatttgattcttggttccataatggtgactttttccttatggttcttttgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G090573_T01 (Zea mays), 3'ss of exon 3
---gtttattctccatggaatgtggtctaatttgattcttggttccataatggtgactttttccttatggttcttttgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
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tttgtgcattttt-atgcaacatg-tatgatttatttccattttgctctgggactcaatacattatttgcttattatatttcaatgtaacatcgaaat-gcagGATTTCTTTGAGGATGTTGGACCACTGGTTAGCTTACAGCTAGGTGGTTCCGCGATGGATGGGCTTCTGAAAATATTCAACTCGTATGTAAACTTGCTGA
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G23840.1 (Glycine max), 3'ss of exon 4
gtttattctccatggaatg-tggtcta-----atttgattcttggttc-cataatggtgactttttccttatggttcttttgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
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-cttctttcagaagacatactcatctctgcacattttaatcttgtttaactccatactaagttctttct-atgtttcct--gtttggtttt---aatgcttatacagGACTTCTTTGAGGATGTAGGACCACTGCTTAGCATGCAGTTGGGAGGCCAAGCTCTCGAAGGATTGTTTCAAGTATTTAACTCCTATGTGAACATGCTCA
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G00570.2 (Glycine max), 3'ss of exon 5
gtttattctccatggaatgtggtctaatttgattcttggttccataatggtgactttttccttatggttcttt---tgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
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gtttaa-ctccattccaagt--tctttctatgtttcctgtttggttttaatggttttatatttttgattcactctatgatggatgttctgtatgcttatacagGACTTCTTTGAAGATGTTGGACCACTGCTTAGCATGCAGTTGGGAGGCCAAGCTCTCGAAGGATTGTTTCAAGTATTTAACTCCTATGTGAACATGCTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatggtgactttttccttatggttcttttgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
ttgttctt CT-rich tract
acttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttattctccatggaatgtggtctaatttgattcttggttccataatggtgactttttccttatggttcttttgctgcattttccaattgttcttgcagGATTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAGTTAGGAGGTCAAACACTTGAAGGCTTGTTCCAGGTGTTTAATTCATATGTGAATTTGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -ccatgga
- - - - - - - - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcatt