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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC

Basic information

species Vitis vinifera
transcript Vv09s0018g01780.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G00560.1 (Glycine max), 3'ss of exon 3
gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagctttt-ttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC
                                                                                       | ||    ||  || | | | |   ||| |||     |   |    |||  | | | ||  |  ||||  |       |  |  ||||| || |   ||  | | ||||||||||||||  | |||||  | ||||||||||||||||| |||||||||||| | |||||||| || ||||||||||  ||| ||||||| |||||
---------------------------------------------------------------------------------------gtaagccgttttttttat-attatttttctctactatttcttccttgtatatatgtattagt-taatataaacaggattcgaaaatctaactctagctacctggattgcagATGAATGCGTTAAAAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G23440.1 (Glycine max), 3'ss of exon 3
gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtga--gttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC
                                                                                                |  |||||| |   ||  ||  | |||   |   ||  |  |  | |     |   || |  ||      ||| ||         | | ||  | | ||||||||||||||| | |||||  |||| || ||||||||||| |||||||||||| ||||||| || || ||||||||||  ||  ||||||| |||||
------------------------------------------------------------------------------------------------ttattctgttactattaattattgttttatttcattgaaacatatatgatagtgcgcattcagaaa---aatagatttcaagtactctctacttgggttgcagATGAATGCATTAAAAAACTTAGGTCTCAATGTTGTTAAGGCAAATGTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G02580.1 (Glycine max), 3'ss of exon 3
gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctt-tggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC
                                                                                             | ||  |  |     ||  ||| | |  | |     | |  | |  |     ||  || || | || |||  |  || |        | | ||  | | ||||||||||||||| | |||||  |||| || ||||||||||| |||||||||||| ||||||| || || ||||||||||  ||  ||||||| |||||
------------------------------------------------------------------------------------------ctctgttactattaattattgttttatttcatcgaaacatatatgaaagtgcgcattcataaaaaaagacttcaaaaccaac--------tctctacttgggttgcagATGAATGCATTAAAAAACTTAGGTCTCAATGTTGTTAAGGCAAATGTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G44740.1 (Glycine max), 3'ss of exon 3
gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC
                                                                                                       || ||  | ||  | | |  ||    ||   |   | |   ||  |  ||||  |       | ||  ||||  || | ||         ||||||||||||  | | |||  | ||||||||||||||||| |||||||| ||| |||||||||| || || |||||||  ||| ||||||| |||||
-------------------------------------------------------------------------------------------------------gtaagc-cgttcatttcttccttgtattatatgtatattaattaat-taatataaacagaatttcaaaatctgactgtatt---------gcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823556|gb|FQ414966.1|FQ414966
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|28965852|gb|CB344885.1|CB344885
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32271352|gb|CD720511.1|CD720511
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110386695|gb|EC951311.1|EC951311
EST:     TATTGTGGAGATAACTTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: TATTGTGGAGATAAC-TTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|111125066|gb|EE253677.1|EE253677
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCACTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351024111|gb|FQ423534.1|FQ423534
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351031377|gb|FQ445402.1|FQ445402
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|34542620|gb|CF510852.1|CF510852
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|349823504|gb|FQ414914.1|FQ414914
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110372559|gb|EC936737.1|EC936737
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32248427|gb|CD714246.1|CD714246
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110387079|gb|EC951719.1|EC951719
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351015119|gb|FQ444408.1|FQ444408
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351022170|gb|FQ438755.1|FQ438755
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110390868|gb|EC955807.1|EC955807
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|26262317|gb|CA813380.1|CA813380
EST:     CTATNGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29784413|gb|CB345109.2|CB345109
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTGGACAAT                         ATGAATGCACTTAAAAATGTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|294965939|gb|GW839278.1|GW839278
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCACTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32268834|gb|CD717993.1|CD717993
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110385943|gb|EC950505.1|EC950505
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110413183|gb|EC978960.1|EC978960
EST:     GAGATAAACTTTTGGTGATCGC-TGGGAAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: GAGAT-AACTTTTGGTGATCGCTTGGG-AGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29784391|gb|CB345050.2|CB345050
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32269676|gb|CD718835.1|CD718835
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110372429|gb|EC936593.1|EC936593
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110383897|gb|EC948302.1|EC948302
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110687744|gb|EE065504.1|EE065504
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29785638|gb|CB342854.2|CB342854
EST:     CGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC
                 ttctgat  putative branch site (score: 3)
                                tagcttttttaaatt  TA-rich tract