Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattttttatggttggaaactaatgcatagttcctcacattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG

Basic information

species Vitis vinifera
transcript Vv09s0018g01710.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os08g45240.2 (Oryza sativa), 3'ss of exon 2
----aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattttttatggttggaaactaatgcatagttcctcacattc--acagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG---
      |  ||||| |  |  |||| |  | | | |    | | || |||| |   |  |||| ||  || |||  | ||||   || ||   | | |||   ||||||||  |||||||| | || || ||||| |  || | ||| ||||| |||||||| |||||| | |||||||| | |||| ||||||||||||| |   
cctccctccctgtgtttgt-tatgttttctta-tgtacacagt-agtacttattggt--atttcttgaggctggcca-taatttgtacttttaccctttctttcagGTTGTTCGAGATAAGAGAACTGGCAAAACAAAAGGATATGGATTTGTGAGCTTTTCAAACCCTACTGACCTTGCTGGAGCAATTAAAGAAATGAATGGTT

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os08g45240.4 (Oryza sativa), 3'ss of exon 2
----aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattttttatggttggaaactaatgcatagttcctcacattc--acagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG
      |  ||||| |  |  |||| |  | | | |    | | || |||| |   |  |||| ||  || |||  | ||||   || ||   | | |||   ||||||||  |||||||| | || || ||||| |  || | ||| ||||| |||||||| |||||| | |||||||| | |||| ||||||||||||| |
cctccctccctgtgtttgt-tatgttttctta-tgtacacagt-agtacttattggt--atttcttgaggctggcca-taatttgtacttttaccctttctttcagGTTGTTCGAGATAAGAGAACTGGCAAAACAAAAGGATATGGATTTGTGAGCTTTTCAAACCCTACTGACCTTGCTGGAGCAATTAAAGAAATGAATG

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G36570.1 (Glycine max), 3'ss of exon 3
--aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattttttatggt-tggaaactaatgcatagttcctcacattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG
  ||      | | |||  ||   |  |   | | |||     | | ||     |    | || |  || | |  | ||| | ||  ||      | |   ||||||||||||| |||||||| || ||||| |  || | ||| ||||| |||||| |||| ||||| |||||||| || || |||||||||||||| |
ctaagcaaacttaacttttattatttatgtgtttgtggtgcatgtatttccttgtgatgtgttgacagtgttgtgattaaggtatgtttatcttgact---agGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATG

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G30900.2 (Glycine max), 3'ss of exon 3
---aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattt--tttatggt-tggaaactaatgcatagttcctcacattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG
   ||      | |  ||   | |   |||| | ||||   ||      | || ||  | |   || |  || | |  | ||| | ||  ||      | |   ||||||||||||| |||||||| || ||||| |  || | ||| ||||| |||||| |||| ||||| |||||||| |  || |||||||||||||| |
ctaaacaaacttaacgtt---tattatttaagtgtttgtggtgcatgtatttccttgtaatgagttgacagtgttgtgattaaggtatgtttatcttgact---agGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGGTGCTCTTAAAGAAATGAATG

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G01300.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------aattgctgtgatcttgcatgtctgttaaatatttggaatga-ggacttgtca----tttcattttttatggttgga---aactaatg---catagtt---cctcacatt-cacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG
                                                                 |     | |    || |   || | |   | |||| |  ||  || |||| |    ||   | | |||  || ||       |||||      ||||     | |  ||    |||||||||||||||| ||||| || ||||| |  || | ||| ||||| |||||| |||| ||| | |||||||| || ||  ||||||||||||| |
gtaagtggattactcatctagctcaaatgatttttatgtttaggaatgattgtggtgcttctgtgagcatttttctatttcctcttcagatttttgtttgaagggacagagttgttaatatttgtgtatcttaacgtaggtcttgcttaatgacctgaagttatgtttgatcttgtctagGTTGTCAGAGATAAACGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTGTTAAAGAAATGAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809484|gb|FQ414374.1|FQ414374
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAAGAAAAACCAGGGGCTTTGGG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGG
EST: gi|351039210|gb|FQ457885.1|FQ457885
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGG
EST: gi|349827356|gb|FQ421629.1|FQ421629
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|352795514|gb|FQ480102.1|FQ480102
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|352791460|gb|FQ481039.1|FQ481039
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTGGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351042630|gb|FQ451045.1|FQ451045
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351053774|gb|FQ441540.1|FQ441540
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349828848|gb|FQ419181.1|FQ419181
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349818650|gb|FQ403285.1|FQ403285
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|110728709|gb|EE104516.1|EE104516
EST:     ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351044071|gb|FQ452744.1|FQ452744
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|110365693|gb|EC929076.1|EC929076
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349808023|gb|FQ402414.1|FQ402414
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351048747|gb|FQ449615.1|FQ449615
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351037484|gb|FQ460683.1|FQ460683
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351047482|gb|FQ454974.1|FQ454974
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|27583752|gb|CB006447.1|CB006447
EST:     ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAGA                         GTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|30137999|gb|CB923337.1|CB923337
EST:     ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351028807|gb|FQ433237.1|FQ433237
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349819475|gb|FQ413359.1|FQ413359
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351053076|gb|FQ456683.1|FQ456683
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351032515|gb|FQ458880.1|FQ458880
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAG
EST: gi|351036139|gb|FQ463984.1|FQ463984
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351036156|gb|FQ464001.1|FQ464001
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|33404798|gb|CF210425.1|CF210425
EST:     ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349809654|gb|FQ414544.1|FQ414544
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCGGAGATAAACGGACAGGAAAAACCAGG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGG
EST: gi|351053571|gb|FQ462646.1|FQ462646
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGAC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGAC
EST: gi|351057426|gb|FQ454108.1|FQ454108
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGANAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351016422|gb|FQ423849.1|FQ423849
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351037773|gb|FQ464214.1|FQ464214
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349817264|gb|FQ405268.1|FQ405268
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAAAGATAA
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAA
EST: gi|351040618|gb|FQ438162.1|FQ438162
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAAATAAACGGACAGGAAAAACCAGGGG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGG
EST: gi|349824137|gb|FQ417524.1|FQ417524
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349810966|gb|FQ405954.1|FQ405954
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351053617|gb|FQ440126.1|FQ440126
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351043158|gb|FQ451331.1|FQ451331
EST:     ATGTTCTTTCAAAATCATTTTCACGATNTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAG
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAG
EST: gi|351046990|gb|FQ454600.1|FQ454600
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|349819739|gb|FQ402676.1|FQ402676
EST:     GTGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351054270|gb|FQ450352.1|FQ450352
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
EST: gi|351043403|gb|FQ451455.1|FQ451455
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAA
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAA
EST: gi|351033445|gb|FQ462096.1|FQ462096
EST:     ATGTTCTTTCAAAATCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA                         GTTGTCAGAGATAAACGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC
genomic: ATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttat ... acattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatttcattttttatggttggaaactaatgcatagttcctcacattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG
                                        tcctcac  putative branch site (score: 2)
                                       ttcctcac  CT-rich tract
     atttcattttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattgctgtgatcttgcatgtctgttaaatatttggaatgaggacttgtcatttcattttttatggttggaaactaatgcatagttcctcacattcacagGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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