Sequence
atgc intronic sequence ATGC exonic sequence...tctccacatttgcattactgaaataattagaatatagcattatttgcatcatagaatcacacctagtcattctaaggatctaaattgcttgccatttcagGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G36990.1 (Glycine max), 3'ss of exon 3
tctccacatttgcatta--ctgaaataattagaatatagcattatttgcatcatagaatcacacctagtcattctaaggatctaaattgcttgccattt--cagGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
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-gtgaattcatgctttatcctgaaaccaatgcattttctcataatttgtccc-tagcttgacaattaa-cagactcatcactcatgt-acatatcattttacagGTTGAACCCGGTCATACAATTCTTGTCCATGCAGCAGCTGGCGGAGTTGGATCCCTATTGTGTCAGTGGGCAAATGCTCTTGGTGCAACTGTTATAGGAA
upper sequence: Vv09s0002g08470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G61510.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------tctccacatttgcattactgaaataattagaatatagc---attatttgcatcatagaatcacacctagtcattctaaggatctaaattgcttgccatttc---agGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
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gttagttttcattcctatttctaggaagttattaataagaagaccaagagcaggatttgtgtcttcttgc-ctgttgaacagagtagagttttgttatattggtcgcgtttttcaa--agatctattcactatatgactcaagtcctatttgtatttggaaagGTCGAACCTGGGCACACAATCCTTGTTCATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCACTGTGATTGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859918|gb|DT008973.1|DT008973EST: TCATGGTTAAGGGTATGACAGTTCATTATCTTGTCCGTTGCTGCTTCAAG GTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGG
genomic: TCATGGTTAAGGGTATGACAGTTCATTATCTTGTCCGTTGCTGCTTCAAGgtaggttata ... gccatttcagGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatcatagaatcacacctagtcattctaaggatctaaattgcttgccatttcagGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
atctaaa putative branch site (score: 3)
ccatttc putative PPT
atctaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctccacatttgcattactgaaataattagaatatagcattatttgcatcatagaatcacacctagtcattctaaggatctaaattgcttgccatttcagGTTGAACCTGGACACATAGTCCTTGTCCATGCAGCAGCTGGTGGAGTTGGGTCTCTATTATGCCAGTGGGCAAATGCCCTTGGCGCCACTGTAATTGGAA
-ctccaca
- - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - tgcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacacc