Sequence
atgc intronic sequence ATGC exonic sequence...cgaggagcattttgtccaattcagattttacttatctcaggacataacatattgataatattggactgatgtgctggttccttttttttttttttttcagGCTAACATATGGCTGGGTACATTGTTGTTGGAACGCAGTGAAGATATATATCGGATGAAAGGTCTCCTTTCTGTTCAGGGAATGGATGAGAGGTTTGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G43740.1 (Glycine max), 3'ss of exon 8
----------------------------------------------------cgaggagcattttgtccaattcagattttacttatctcaggacata-acatattgataatattggactgatgtgctggttccttttttttttttttttcagGCTAACATATGGCTGGGTACATTGTTGTTGGAACGCAGTGAAGATATATATCGGATGAAAGGTCTCCTTTCTGTTCAGGGAATGGATGAGAGGTTTGTCT
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gttagacattgacatatacttaatgctaagtgtatcaatttctcttttccatttggatgcttcgggaatgccttttattccagatgtttatgtacatgtaaaaactaaaaagtcaatgttggcatttgcatactaaaaggctacctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATAGGATGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCT
upper sequence: Vv09s0002g08230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G38450.1 (Glycine max), 3'ss of exon 8
-----------------------------------------cgaggagcattttgtccaattcag--attttacttatctcaggacataacatattgataatatt---ggactgatgtgctggttccttttttttttttttttcagGCTAACATATGGCTGGGTACATTGTTGTTGGAACGCAGTGAAGATATATATCGGATGAAAGGTCTCCTTTCTGTTCAGGGAATGGATGAGAGGTTTGTCT
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gttagacattggcgtatgcttaatgctaagtttatcaatttctctttaccatttggatgcttcgggaatggcttttattccagatgtttatgtacatgtaaaatttcaatattggcatttgcatactaaaaggttacatttttcagGCTAACATGTGGCTTGGTACCTTGTTGCTGGATCATAGCGAAGACATTTATAGGATGAAGGGACTTCTGTCTGTTCAAGGAATGAATGAAAGATTTGTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacatattgataatattggactgatgtgctggttccttttttttttttttttcagGCTAACATATGGCTGGGTACATTGTTGTTGGAACGCAGTGAAGATATATATCGGATGAAAGGTCTCCTTTCTGTTCAGGGAATGGATGAGAGGTTTGTCT
gactgat putative branch site (score: 3)
tgtgctggttcctttt CT-rich tract
ttcctttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgaggagcattttgtccaattcagattttacttatctcaggacataacatattgataatattggactgatgtgctggttccttttttttttttttttcagGCTAACATATGGCTGGGTACATTGTTGTTGGAACGCAGTGAAGATATATATCGGATGAAAGGTCTCCTTTCTGTTCAGGGAATGGATGAGAGGTTTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - -ccaattc
- - - - - - - - - - - - - - - - - - -caggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt