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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttcattatgaattttcacactgcactcctatagctatatttttttttttttttttctaatacagtatttttaatacatatattttagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT

Basic information

species Vitis vinifera
transcript Vv09s0002g06030.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G22450.1 (Glycine max), 3'ss of exon 2
gtactttcattatgaattttcaca---ctgcactcctatagctatat--ttttttttttttttttctaatacagtatttttaatacatatattttagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT
          ||| | ||| ||||    ||      | |  ||||||  || |||| ||||    || |  |  | || | |||  |||| ||  || ||||||||||||||||||| ||||| |||||| ||||| | ||||| |||||||||| ||||||||||||  || |||||||||||||||||
---------gtataattttgcacaaatttggttgattctgactatatcattattttattttaccactcacccttttttctcaatg-atatgttacagGTTTTTGTTTGGTCAATGAAAACGGGGCGCTTGATGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGACTGGTGTTTTCTCCTACAAAT

upper sequence: Vv09s0002g06030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G10290.1 (Glycine max), 3'ss of exon 2
gtactttcattatgaattttcacactgcactcctatagcta-tatttttttttttttttttctaatacagtatttttaatacat-atattt--tagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT
          ||| | ||| ||||    |     ||    | ||| |  || |||| ||||   |  |||  |||||  |  || ||||||   || ||||||||||||||||||| ||||| |||||| ||||| | ||||| |||||||||| |||||| |||||  || ||||||||||||| |||
---------gtataattttgcacaaattaggttgattctgactatatcgttattttattttaccactcagcctttttgctcaatgatatttaacagGTTTTTGTTTGGTCAATGAAAACGGGGCGCTTGATGGATGTGCTTAGTGGTCATGAAGCTCCTGTCCATGGTCTGGTGTTTTCTCCTACGAAT

upper sequence: Vv09s0002g06030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G15440.2 (Arabidopsis thaliana), 3'ss of exon 3
gtactttcattatgaattttcacactgcactcctatagctatatttttttttttttttttctaatacagtatttttaatacatatattt-tagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT
||| ||  | |  |    |  |    | | | |  |  |  || |      |  |||  |    |  |  | |||         ||| |  |||||||||| ||||| | |||||| || |   |   ||||||||| || || ||||| | |||||||||||||||||||||||||||   ||  
gtaattcaacttaggccctgaa----ggatttcagtcacc-tactcacaaatactttggtgaggtgaatcactttatgcttgcctatgtgcagATTTTTGTATGGTCCAAGAAGACTGGGCAAATAAAGGATATTCTGAGTGGGCATGAGGCTCCTGTTCATGGGTTGATGTTTTCTCCCTTAACG

upper sequence: Vv09s0002g06030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S87_39V6.1 (Physcomitrella patens), 3'ss of exon 2
---gtactttcattatgaattttcacactgcactcctatagctatatttt-----tttttttttttttctaatacagtatttttaatacatatattttagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT
     |  | ||   |      |   | |    |  | |  || ||||||       |||    |   | |   |    |||  | ||    |  || |||| |  ||||||||  |||| || ||  | ||||||||| | || ||||||||||||||||||||||| || ||    || ||||||||   |
catagagatccaggttagccaatttgagtctctttttgttactttattttagtggcatttagcatgcgcgagcgctaattttgaagtaatctttgttcagATATACGTTTGGTCGGTGAAAACAGGAAGGTTGTTGGATGTGCTGAGCGGTCATGAAGGTCCTGTTCACGGCTTATCCTTCTCTCCTACTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatatttttttttttttttttctaatacagtatttttaatacatatattttagATTTTTGTTTGGTCAATGAAGACGGGCCGCTTGTTGGATATTCTTAGCGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAAT
     attttttttttttttt  TA-rich tract