Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagatgatgcctgttctttttagttcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG

Basic information

species Vitis vinifera
transcript Vv09s0002g06000.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G22410.1 (Glycine max), 3'ss of exon 3
ttaagatgatgcctgttctttttagt-----tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
 |   ||||  ||| |  || | |||     || | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |
-ttgaatga--cctatctttctaagtattcatctttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G03680.3 (Glycine max), 3'ss of exon 3
-ttaagatgatgcctgttctttttagt-tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG----
 |||  |    |  |||   | | ||| |  | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |    
gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGA

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G22410.2 (Glycine max), 3'ss of exon 3
ttaagatgatgcctgttctttttagt-----tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG---------------------------------
 |   ||||  ||| |  || | |||     || | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |                                 
-ttgaatga--cctatctttctaagtattcatctttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGTACCAGAATATTCCTTGTTTCTCTTAAT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G03680.1 (Glycine max), 3'ss of exon 3
-ttaagatgatgcctgttctttttagt-tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
 |||  |    |  |||   | | ||| |  | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |
gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G03680.2 (Glycine max), 3'ss of exon 3
-ttaagatgatgcctgttctttttagt-tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
 |||  |    |  |||   | | ||| |  | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||   
gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG---

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G01360.1 (Glycine max), 3'ss of exon 3
ttaagatgatgcctgttctttttagttc--atgccttggtgc-caatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
 |    | |      || | ||||||    ||||  |  |    ||  |||||| ||||| |  ||  |       |   || ||  || | || | | |||||||||||||||||| ||| | ||||||| ||| | ||| |||||||| ||||| |||| |||||| |
-tttttttaaaataattttctttagtcacaatgctgtaatatataaccattttg-aagta-tgcttgatatacgtttgccttgttgtttgttttggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G43980.1 (Glycine max), 3'ss of exon 2
ttaagatgatgcctgttc-tttttagttc----atgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
     || ||  || |   ||   | | |    ||   |  ||    |    ||| |||||| | |||  |   |   |  ||| ||   | | || | | |||||||||||||||||| ||| | ||||||| ||| | ||| |||||||| ||||| |||| |||||| |
----aatcatttctttagattcacaatgccgtaatatataagtatataacccttttgaagta-tgtttaatatatgtttgctttgttgtctgttttggttgatagGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383499|gb|EC947874.1|EC947874
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|71869211|gb|DT018266.1|DT018266
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|37184968|gb|CF604321.1|CF604321
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110710069|gb|EE086082.1|EE086082
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110416472|gb|EC982456.1|EC982456
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110372596|gb|EC936778.1|EC936778
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|77583916|gb|DV220998.1|DV220998
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110729376|gb|EE105272.1|EE105272
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|30130611|gb|CB915950.1|CB915950
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110409652|gb|EC975320.1|EC975320
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110391356|gb|EC956324.1|EC956324
EST:     GAAGGGACATTTTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110732279|gb|EE107427.1|EE107427
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110363963|gb|EC927598.1|EC927598
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|34363406|gb|CF404991.1|CF404991
EST:     GAAGGGCCATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110388157|gb|EC952876.1|EC952876
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|22015288|gb|BQ800322.1|BQ800322
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110379671|gb|EC944884.1|EC944884
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|351023328|gb|FQ432711.1|FQ432711
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCCGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110358977|gb|EC919699.1|EC919699
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|34416754|gb|CF415508.1|CF415508
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110388522|gb|EC953282.1|EC953282
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|18458128|gb|BM436406.1|BM436406
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110688079|gb|EE066223.1|EE066223
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|71890751|gb|DT039806.1|DT039806
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|51989643|gb|CV179098.1|CV179098
EST:     GAACGCACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAG
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAG
EST: gi|110720795|gb|EE097031.1|EE097031
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110686825|gb|EE064905.1|EE064905
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|22011533|gb|BQ796567.1|BQ796567
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|351021701|gb|FQ437086.1|FQ437086
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110726657|gb|EE102629.1|EE102629
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|22011530|gb|BQ796564.1|BQ796564
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110697767|gb|EE075131.1|EE075131
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110419881|gb|EC986135.1|EC986135
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110689245|gb|EE065301.1|EE065301
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110383239|gb|EC947598.1|EC947598
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|351028470|gb|FQ444751.1|FQ444751
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110383358|gb|EC947726.1|EC947726
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|37189375|gb|CF608724.1|CF608724
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|351015867|gb|FQ431822.1|FQ431822
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110705917|gb|EE083315.1|EE083315
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110704719|gb|EE081713.1|EE081713
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110417183|gb|EC983218.1|EC983218
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|46919594|gb|CN548923.1|CN548923
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110687315|gb|EE064616.1|EE064616
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110715813|gb|EE094294.1|EE094294
EST:     GAAAGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|37187454|gb|CF606807.1|CF606807
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|71890518|gb|DT039573.1|DT039573
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110372495|gb|EC936667.1|EC936667
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|37189413|gb|CF608762.1|CF608762
EST:     GAAAGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110384407|gb|EC948841.1|EC948841
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|22015168|gb|BQ800202.1|BQ800202
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
EST: gi|110377523|gb|EC942592.1|EC942592
EST:     GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAG                         GAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC
genomic: GAAGGGACATTCTGGATGCAGACCATCCTGTTGGTCCGTTTGGTACAAAGgttagtatta ... ttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
                                       ttttgttt  CT-rich tract
                           ataatttattcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaagatgatgcctgttctttttagttcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - -tgcctgt
- - - - - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - -ccaatga