Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA

Basic information

species Vitis vinifera
transcript Vv09s0002g05110.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G22180.1 (Glycine max), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
       ||   |||   | |||| |  ||| |   |   |   |  |  ||| |  |||||  ||          || ||  | |||  ||| ||||  |  | ||||||||||| ||||| ||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||| || ||||| ||||| ||||
-------gtttgtttgttgtctttaattttacatcgtttatcaatctt--acaatagttgtctgtc--------agatgatccagctttgatttttgttctggtacagAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGA

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G03850.1 (Glycine max), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
       ||   |||   | |||| |  ||| |  ||   |   |  |  ||| |  | |||  ||          || ||  | |||  ||| ||||  |  | ||||||||||| ||||| ||||||||||||||||| |||||||||||||| || || ||| |||||||||||||||||||||| || ||||| ||||| ||||
-------gtttgtttgttgtctttgattttacataatttatcaatctt--acaatagtcgtctgtc--------agatgatccagctttgatttttgttctggtacagAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCCGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGA

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G43760.1 (Glycine max), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
                  |    ||  |||  |   ||     ||| ||||   |  | |||  | ||    || |  |  || | | |  ||    |  || ||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || |||||| ||||||| ||||| || || || |||||||||||||| ||||
------------------gtgggttgcctttgatcttgcaccatttatcaatcgt-ctagtcaatgtttgtcagatgatccaagcttaatttttaatttctagtgcagAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTGTATCGGTCAGACAGAGAATATAGGGAAGCAATAAAGTGTTATCGGAATGCACTGA

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G01580.2 (Glycine max), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
                             |    |    ||| |||  || ||||  |    ||||      |  | || | | | | |  ||||| |  |  ||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || |||||  ||||||||||||| || || || |||||||| |||||  |||
----------------------------gttggttgcctttgattttgcaccatttatcaatcttccagccaatat-ttgtcagcttaattttctttttctggtgcagAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTGTATCGGTCAGATAGAGAATACAGGGAAGCAATAAAGTGTTATCGAAATGCATTGA

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ36800 (Selaginella moellendorffii), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
                                                 |   || ||      ||||| | |   || |||     || |    ||| |     ||||| ||  | || |||||||||||||||||||||||||| || || ||||| || ||| | |||||| | || || || ||||| || || ||||| || |
-----------------------------------------------gtactgtttttctgtaatcttatatatacatgata-----tagaacaatgtttggtatcagAACGATGTGAAGAGCCATGTTTGCTGGCATGTCTATGGCCTTCTCTACCGCTCCGACAGGGAATACCGCGAAGCTATAAAATGCTACCGCAATGCGCTTA

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ27872 (Selaginella moellendorffii), 3'ss of exon 3
gttggatgtccttttcaagccttttagcttaaagtatggttggtttctcaacattgtttgtccttcttaaagaggtat-tataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
                                                    | ||||| ||  |   ||   | ||| || |     || |    ||| |     ||||| ||  | || |||||||||||||||||||||||||| || || ||||| || ||| | |||||| | || || || ||||| || || ||||| || |
--------------------------------------------------gtactgtttttctgt---aatctgatatatacatgatatagaacaatgtttggtatcagAACGATGTGAAGAGCCATGTTTGCTGGCATGTCTATGGCCTTCTCTACCGCTCCGACAGGGAATACCGCGAAGCTATAAAATGCTACCGCAATGCGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttgtccttcttaaagaggtattataaaccttaaattcttgtcttaatgcagAATGACCTCAAAAGCCATGTTTGCTGGCATGTCTATGGTCTCCTTTACCGATCAGACCGAGAATACAGGGAGGCGATCAAATGTTATCGGAATGCCCTGA
                                            tcttaat  putative branch site (score: 3)
                                      ttcttgtctt  CT-rich tract
                      tattataaaccttaaa  TA-rich tract