1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaacagtaaagaaaaaagagagaaattctctagaaaacagaaaactagtaatttaacattctttctttttatatatattaattaatttactctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTTGGAAAG
species | Vitis vinifera |
transcript | Vv09s0002g04120.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAG GTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTEST: gi|110398271|gb|EC964511.1|EC964511
genomic: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAGgtaagagaga ... tctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTT
EST: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAG GTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTEST: gi|110379188|gb|EC944367.1|EC944367
genomic: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAGgtaagagaga ... tctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTT
EST: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAG GTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTT
genomic: CATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAGgtaagagaga ... tctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTT
tagtaatttaacattctttctttttatatatattaattaatttactctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTTGGAAAG
tttactct CT-rich tract
atttaacattctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacagtaaagaaaaaagagagaaattctctagaaaacagaaaactagtaatttaacattctttctttttatatatattaattaatttactctgaaccagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTTGGAAAG
aaacagt
- - - - aagaaaa
- - - - - - - - - agagaaa
- - - - - - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - - aaaacta