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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgtggcttataagtttatgctaatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG

Basic information

species Vitis vinifera
transcript Vv09s0002g03740.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 3
gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgtggcttataagtttatgc--taatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
|||||||||  |||  || || | ||| |||||||||            |      |||  | | ||||||||    | |||   || | ||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
gttagtgggactatcattattggctccctttctgtcacaac--------atggttctgt-atttatggcttatggaatcatgtcttattctttttcccagGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAG

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 3
gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgt----ggcttataagtttatgc--taatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
|||||||||  |||| || || ||||| |||||||||  ||| | || ||| || | ||| ||| |    ||||||| |  | |||   || ||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
gttagtgggagtatgattattgggtccctttctgtcactgtggtctgagacaacttggttatgtattcatggcttatgaaatcatgtcttattatttttcccagGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAG

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G21610.1 (Glycine max), 3'ss of exon 4
gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgt----ggcttataagtttatgc--taatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
|||||||||  |||  || || | |||  |||| |||  ||| | || ||| || | ||||||| |    |||||||    |||||   || | ||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
gttagtgggactatcattattggctcccattctttcactgtggtctgagacaacttggttgtgtattaatggcttatggaattatgtcttattctttttcccagGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAG

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G21620.2 (Glycine max), 3'ss of exon 3
gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgtggcttataagtttatgctaatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
||||||||   |||  || || | ||| |||||||||             | || | ||| ||| |    ||     |||| ||    ||||  ||||||||||||||||||||||||||||||||  ||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
gttagtggaactatcattattggctccctttctgtca-------------caacttggttctgtat----taatgtcttattct----ttttccccagGCTTTTGTCCATTGCAGAAGAGACTTTAGAAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAG

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G52150.1 (Arabidopsis thaliana), 3'ss of exon 3
--------gttagtggggatatggttgttaggtccttttctgtcatcgtgctttgtgaccaccttgttgtgtgtggcttataagtttatgctaatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
         ||| | || ||||||||  |  ||   ||     |  |    ||||| |     |  || | || |  | ||   |  ||| ||    | ||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||
gttggttctttaattggaatatggttactctgttagttaaaaactacac-ttttgtca-----tatttttctgagattcattgatacatgtta----tgttttcagACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCAACTGGAACCGCTGTTGAGTGGGTTCAGATGCCTGGAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgaccaccttgttgtgtgtggcttataagtttatgctaatattttttccagGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAG
                                     tgctaat  putative branch site (score: 2)
                                           tattttttcc  CT-rich tract
                          ttataagtttatgcta  TA-rich tract