1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaggatttgatctctctttgtgaattggtgctttgattctctacatacctctaacttcatcaccttttgtgtctcatgtgtaccaaaaaaaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGTAGTAGCTCTTCGAAACCGGCTAACGAGTCCCAAGAT
species | Vitis vinifera |
transcript | Vv09s0002g03410.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGGAAAG ATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAEST: gi|30251265|gb|CB968998.1|CB968998
genomic: CAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGgtaccccagc ... aaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
EST: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAG ATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAEST: gi|30251271|gb|CB969004.1|CB969004
genomic: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGgtaccccagc ... aaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
EST: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAG ATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAEST: gi|110386232|gb|EC950813.1|EC950813
genomic: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGgtaccccagc ... aaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
EST: TCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAG ATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAEST: gi|156736126|gb|EV240247.1|EV240247
genomic: TCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGgtaccccagc ... aaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
EST: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAG ATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
genomic: TTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGgtaccccagc ... aaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAA
atacctctaacttcatcaccttttgtgtctcatgtgtaccaaaaaaaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGTAGTAGCTCTTCGAAACCGGCTAACGAGTCCCAAGAT
ctctaac putative branch site (score: 2)
aaaaaaaaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggatttgatctctctttgtgaattggtgctttgattctctacatacctctaacttcatcaccttttgtgtctcatgtgtaccaaaaaaaaacaaaagATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGTAGTAGCTCTTCGAAACCGGCTAACGAGTCCCAAGAT
- - - - - -tctctct
- - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - -ctctaca
- - - - - - - - - - - - - - - - - - - - - - - - cctctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccaaa