Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttctgttctaaatcaatcagtaggggttcatatatacttcacacttgctttagtactattaggatggtgttgattaactactgtctttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCATTAGGCTGCCTGCCAGCAACAAAAACTTTATTCGGGTTCCATCAGAGCG

Basic information

species Vitis vinifera
transcript Vv09s0002g03140.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G01680.1 (Glycine max), 3'ss of exon 3
gtatttttctgttctaaatcaatcagtaggggttcatatatacttcacacttgctttagtac---tattaggatggtgttgatta-actactgtctttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCATTAGGCTGCCTGCCAGCAACAAAAACTTTATTCGGGTTCCATCAGAGCG
    | | |  | |||  |   |   ||  | | ||     | | |||| ||   ||||| |   | ||   |   |  || ||  ||| || | |||||| | ||||||||||||| ||||| || |||||| ||||  ||||||||||||||||||| || ||||| || ||  |||  ||| |||| || |||||| |||  |
-cgatatacc-tcctatgt---ttgatatagatcca-gcccaatccacatttaaattagtccaaatgttgaaaaattaatggttccactgctttgtttgaacacagGACTTGTATGGATTGGGAGCCAGGAGACTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGGACTATATTTGGTTTCCATGAGAATG

upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G21340.1 (Glycine max), 3'ss of exon 3
gtat-ttttctgttctaaatcaatcagtaggggttcatatatacttcacacttgctttagtactattaggatggtg-ttgattaactactgtctttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCATTAGGCTGCCTGCCAGCAACAAAAACTTTATTCGGGTTCCATCAGAGCG
 |||   | || |  |  ||  |    |   |    ||  | | |||| | | | |  | |  |   |   |  || ||      ||  | | |||| |   ||||||||||||| ||||| |  |||||| ||||  ||||||||||||||||||| || ||||| || ||  |||  ||| |||| || |||||| |||  |
-tatacctcctatgtttgat--acagatctagcccaatgcaca-ttcaaaatagttcaaatgttgagaaattaatggttccgctgcttttttgtttggacgcagGACTTGTATGGATTGGGAGGCAGGAGACTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGGACTATATTTGGTTTCCATGAGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110708453|gb|EE086014.1|EE086014
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCCCTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|30252467|gb|CB970018.1|CB970018
EST:     TTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110690654|gb|EE068002.1|EE068002
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|37188415|gb|CF607764.1|CF607764
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110416850|gb|EC982858.1|EC982858
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGGTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|77578102|gb|DV217820.1|DV217820
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110699841|gb|EE077205.1|EE077205
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|349829471|gb|FQ420003.1|FQ420003
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|30297185|gb|CB973979.1|CB973979
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|351026188|gb|FQ428200.1|FQ428200
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGNGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110707884|gb|EE084789.1|EE084789
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|351036838|gb|FQ459360.1|FQ459360
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110690689|gb|EE068066.1|EE068066
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110699441|gb|EE076440.1|EE076440
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110398746|gb|EC965220.1|EC965220
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|349820296|gb|FQ403912.1|FQ403912
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCGTCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110693430|gb|EE069653.1|EE069653
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110688538|gb|EE067202.1|EE067202
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|87586795|gb|DY474925.1|DY474925
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110361815|gb|EC925315.1|EC925315
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|352786676|gb|FQ479883.1|FQ479883
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110426154|gb|EC992551.1|EC992551
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGGTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|30252385|gb|CB969936.1|CB969936
EST:     TTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|33405107|gb|CF210734.1|CF210734
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110689277|gb|EE065361.1|EE065361
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|351032432|gb|FQ458797.1|FQ458797
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|71877396|gb|DT026451.1|DT026451
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACT
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACT
EST: gi|110372095|gb|EC936240.1|EC936240
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         TACTTGTATGGCTTGGGGGCAAGGAGAATGGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|351030663|gb|FQ438501.1|FQ438501
EST:     CTGATCAGTATGCCTCAATCCTCTTTGGCATATTTTCCAGCTTCATCAAG                         GACTTGTATGGTTTGGGGGCAAGGAAAATTGGGCTGACTTCACTCCCACCC
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110697427|gb|EE074406.1|EE074406
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAG                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
EST: gi|110707568|gb|EE084113.1|EE084113
EST:     CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAA                         GACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA
genomic: CTGATCAGTATGCCTCAATCCTCGTTGGCATATTTTCGAGCTTCATCAAGgtatttttct ... ttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttgctttagtactattaggatggtgttgattaactactgtctttgaaaatagGACTTGTATGGCTTGGGGGCAAGGAGAATTGGGCTGACTTCACTCCCACCATTAGGCTGCCTGCCAGCAACAAAAACTTTATTCGGGTTCCATCAGAGCG
                              gattaac  putative branch site (score: 2)
                                       ctgtcttt  putative PPT
                                            tttgaaaata  TA-rich tract