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...atttgttgcacttgaattttttgttttttatttctgtaaaacttgatgccatctgttggtcttgatctttgttcttttctatattataaatgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATATAGTTACCCATGCATCTCAGCTGCCGAAAGACTTTCTTGTTCCATCCCC
species | Vitis vinifera |
transcript | Vv09s0002g02690.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG GTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATAEST: gi|71861468|gb|DT010523.1|DT010523
genomic: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGGgtaatttcac ... tgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATA
EST: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG GTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATAEST: gi|110688773|gb|EE067709.1|EE067709
genomic: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGGgtaatttcac ... tgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATA
EST: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG GTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATAEST: gi|34543088|gb|CF511320.1|CF511320
genomic: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGGgtaatttcac ... tgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATA
EST: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG GTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATA
genomic: GGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGGgtaatttcac ... tgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATA
atgccatctgttggtcttgatctttgttcttttctatattataaatgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATATAGTTACCCATGCATCTCAGCTGCCGAAAGACTTTCTTGTTCCATCCCC
tcttgat putative branch site (score: 4)
tgttttcc putative PPT
tttgttcttttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgttgcacttgaattttttgttttttatttctgtaaaacttgatgccatctgttggtcttgatctttgttcttttctatattataaatgttttccagGTGGCCAACACCCAGATCATGCAGCTCTTTTATCACTAGTTCCAATATATATAGTTACCCATGCATCTCAGCTGCCGAAAGACTTTCTTGTTCCATCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - -gcacttg
- - - - - - - - - - - - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - -gccatct