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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagttactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatagGAAATGGACCATTTGAAGATGGCAGTTGCAAAGATAGATGCTCACCACCCTGATGTCCTTCTAGTTGAGAAATCAGTTTCTCGATTCGCACAAGATTACC

Basic information

species Vitis vinifera
transcript Vv09s0002g00380.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 3
gttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagt-tactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatagGAAATGGACCATTTGAAGATGGCAGTTGCAAAGATAGATGCTCACCACCCTGATGTCCTTCTAGTTGAGAAATCAGTTTCTCGATTCGCACAAGATTACC
                                                                                   |  |   |||| |     |||| |  || ||||| |       |   | |   | | |  | |  ||| ||  | |||  |||   | ||     ||| ||||||||||||||| ||||||||||||| |||||||||| | | ||||| ||  |  || |  | || ||||||||||| || ||||  || || || || |
----------------------------------------------------------------------------------gttaacccctttttacccttagtctggtgcttgtttggtttctggtgcacatg-acgctactgtcatgggttcatgctt--atgttttatatcctttttctagGAAATGGACCATCTGAAGATGGCAGTGGCAAAGATAGCTTCACACCAACCAAACATCTTGTTGGTGGAGAAATCAGTCTCGCGATATGCGCAGGAATATC

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 5
gttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagttactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatagGAAATGGACCATTTGAAGATGGCAGTTGCAAAGATAGATGCTCACCACCCTGATGTCCTTCTAGTTGAGAAATCAGTTTCTCGATTCGCACAAGATTACC
                                                                     | ||| || |         || | |   || || |||  |||||| | |||||              || |  | |  ||| ||  | |||  |||   | ||     ||| ||||||||||||||| ||||||||||||| |||||||||| | | ||||| ||  |  || |  | || ||||||||||| || ||||  ||||| || || |
------------------------------------------------------------------tagttaatcctttttttacccttagtctg--atcctggtt--tggttgctggtgcact------------tgctactgtcatgggttcatgctt--atgttttatatcctttttctagGAAATGGACCATCTGAAGATGGCAGTGGCAAAGATAGCTTCACACCAACCAAACATCTTGTTGGTGGAGAAATCAGTCTCACGATATGCACAGGAATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatatgtttatttactggatttttactttaatggggtttacatactttatagGAAATGGACCATTTGAAGATGGCAGTTGCAAAGATAGATGCTCACCACCCTGATGTCCTTCTAGTTGAGAAATCAGTTTCTCGATTCGCACAAGATTACC
                            ctttaat  putative branch site (score: 4)
                     atttttactttaat  TA-rich tract